Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O24
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical pr... 86 3e-17
Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL031620-3|CAA20928.1| 310|Caenorhabditis elegans Hypothetical ... 30 1.5
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 30 2.0
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 30 2.0
AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical ... 29 3.5
AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical ... 29 3.5
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL033514-9|CAA22098.1| 605|Caenorhabditis elegans Hypothetical ... 29 4.7
Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical pr... 28 6.2
U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm recept... 28 6.2
U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical pr... 28 6.2
>Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical
protein C14B1.10 protein.
Length = 591
Score = 85.8 bits (203), Expect = 3e-17
Identities = 50/141 (35%), Positives = 76/141 (53%)
Frame = +2
Query: 320 VTFVENVPDTDIICKHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHYGY 499
+++VEN+P+ C+ P L II ++++ D EK ++ +LK+R V H+G+
Sbjct: 121 ISYVENLPEATK-CEDFRPANLKIIEEYVSSDLEKELVDLVTNHPSVQSLKHRAVVHFGH 179
Query: 500 EFRYGSNDVDLSCPLQEKIPKICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDK 679
F Y +N + IP + L RL Y P Q+T N Y G GIPSH D
Sbjct: 180 VFDYSTNSAS-EWKEADPIPPVINSLIDRLISDKYITERPDQVTANVYESGHGIPSHYDT 238
Query: 680 HSPFGETILALSLGSDVVMDW 742
HS F + I+++SL SDVVM++
Sbjct: 239 HSAFDDPIVSISLLSDVVMEF 259
>Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical
protein B0564.2 protein.
Length = 160
Score = 37.5 bits (83), Expect = 0.010
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Frame = +2
Query: 374 PKGLHIIPDFLTEDEEKLFLNTFNI--QHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQ 547
P + IP+++ E+EE L+ + Q L NR++++YG G P
Sbjct: 20 PATMIYIPNWIDEEEENLYKSCIENAPQPKWRVLANRRLQNYG-----GVVGKTALIPTD 74
Query: 548 EKIPKICKLLWRRLQHYGYDLGVPVQLTVNKYLPGQGIPSHVDKHSPFGETILALSLGSD 727
+ P K L ++ G + VN+Y GQGI H D + F + ++LGS
Sbjct: 75 D-FPVELKYLMTKINDLGIFKNPVNHVLVNEYEAGQGIMPHTDGPA-FHRIVTTVTLGSH 132
Query: 728 VVMD 739
++D
Sbjct: 133 CLLD 136
>AL031620-3|CAA20928.1| 310|Caenorhabditis elegans Hypothetical
protein C18B12.3 protein.
Length = 310
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +2
Query: 269 EACNGKAQVDENGTTLYVTFVENVPDTDIICKHPNPKGLHIIPDFLTEDEEKLFLNTFNI 448
++C G+ + N T L TF+E D+ +P+ K + DFL E+++ + N
Sbjct: 175 QSCGGRRRFRTNFTELQSTFLE---DSFKESHYPDHKAKKYMADFLKIPEDRITVWFQNR 231
Query: 449 QHVETTLKNRQVKHYGYE-FRYGSNDVDLSC 538
+ ++RQ E F GSN D +C
Sbjct: 232 RAKWRRKEHRQRDRTRNESFSGGSNSFDFAC 262
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 103 HIGPRIFITNNSFQSIQSGSKPFAFLLMFSHR 8
H R+ I NSF + G F+FLLMF+++
Sbjct: 66 HGAKRVLIARNSFSKLMWGLIIFSFLLMFAYQ 97
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 103 HIGPRIFITNNSFQSIQSGSKPFAFLLMFSHR 8
H R+ I NSF + G F+FLLMF+++
Sbjct: 66 HGAKRVLIARNSFSKLMWGLIIFSFLLMFAYQ 97
>AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.8 protein.
Length = 383
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 362 KHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 493
++ P +H+ D LTEDE K + QH + T+K R+ Y
Sbjct: 7 EYDEPFRIHLNLDNLTEDEAKARFSLIYDQHAQ-TMKRRETNDY 49
>AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.2 protein.
Length = 383
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 362 KHPNPKGLHIIPDFLTEDEEKLFLNTFNIQHVETTLKNRQVKHY 493
++ P +H+ D LTEDE K + QH + T+K R+ Y
Sbjct: 7 EYDEPFRIHLNLDNLTEDEAKARFSLIYDQHAQ-TMKRRETNDY 49
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 146 KLLKLLTEYK-------VNTPLPKFVAEKGESY-SYLMFDKAENASLFYEACNGKAQVDE 301
KL K + EYK T + +++ K + Y S + FD +A YE C+G Q +E
Sbjct: 263 KLAKPVEEYKEDEMDDETRTAVREYLVNKLKYYYSVITFDSIPSAVAVYEECDG-FQFEE 321
Query: 302 NGTTLYVTFVENVPD 346
G + + F+ + D
Sbjct: 322 TGLKMDMRFIPDDMD 336
>AL033514-9|CAA22098.1| 605|Caenorhabditis elegans Hypothetical
protein Y75B8A.9a protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 492 MVMSSDMAAMTLT*VAHCRKKYQRFVNCCGEGSNTMVTISEYQFS*LLTS 641
+++ + A + V++ K Y R VN C GSN + +S +F L S
Sbjct: 550 VILCHNQGAHQMWQVSNAGKLYSRSVNKCATGSNDVSALSTLKFCSLANS 599
>Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical
protein T12A7.6 protein.
Length = 402
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 458 ETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKI 556
+ ++ R++ +EFRY SND+ + P+Q+ +
Sbjct: 48 QNRIRWRKLSDLAFEFRYFSNDLKIPKPIQKSL 80
>U53155-9|AAC48273.1| 328|Caenorhabditis elegans Seven tm receptor
protein 138 protein.
Length = 328
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 382 AFRIWMLTNNIS-IRNIFNKCHIECCSILIYLCFPIAC 272
A ++W + +N I IF+ CS++I++CF C
Sbjct: 178 ALQLWSVDSNGKYIFRIFDAISYLICSLIIFICFSTIC 215
>U50069-7|AAB37561.1| 913|Caenorhabditis elegans Hypothetical
protein C09B9.7 protein.
Length = 913
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 449 QHVETTLKNRQVKHYGYEFRYGSNDVDLSCPLQEKIPKICKLLWRRLQHYG 601
Q + L NR Y Y+++Y S+D++L EK+ KI K + L+ YG
Sbjct: 119 QSLANILLNRDTAPY-YDYKYLSSDIELMVKDLEKLKKINK--EKTLKMYG 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,759
Number of Sequences: 27780
Number of extensions: 442996
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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