Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O18
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.4  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 507 EDPVSHPRLPRNHCLCRRQGS 569
           +D V H R PRN  L R+Q S
Sbjct: 107 KDAVQHERGPRNSTLRRQQMS 127


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 507 EDPVSHPRLPRNHCLCRRQGS 569
           +D V H R PRN  L R+Q S
Sbjct: 107 KDAVQHERGPRNSTLRRQQMS 127


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = +3

Query: 210 CGKCLEFSRTQLNRWRQSDRSRLP*ISQVLRA-------FTRRAQSQGESSGP 347
           C KC E  RT   R  +  +   P I + LRA       F R+ ++  ES  P
Sbjct: 72  CAKCTEKQRTAAYRSIKRLKKEYPKIWEQLRAVWDPDDVFIRKFETSFESGKP 124


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 329 GRIKWTSDFWTELPIS 376
           G  +W+S +W  LPI+
Sbjct: 913 GLDQWSSFYWNLLPIA 928


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 329 GRIKWTSDFWTELPIS 376
           G  +W+S +W  LPI+
Sbjct: 913 GLDQWSSFYWNLLPIA 928


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,433
Number of Sequences: 336
Number of extensions: 3098
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)