Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O18
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   6.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   6.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.9  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   7.9  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   7.9  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 154 SALPSLIGRRLRHYSLRPQRILLTPP 77
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 136 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 237
           S MG+LK   DD++ +   ++ LR+    S  ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 608 IKPEAKSAALANIRPLTAAKAMIPRK 531
           +K + KS+AL  + P+T  + ++P+K
Sbjct: 468 VKQQKKSSALKIVNPVTHTEVVVPQK 493


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 346 GPLDSPWLWARRVKARRTWLI 284
           GPL   WLWA+  +   +WL+
Sbjct: 526 GPLVPFWLWAKEYELFNSWLM 546


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 195 FLETQCDVVIGASFQHSHH*SEDVFVIIR 109
           +LE Q ++  G      HH S+DVF++IR
Sbjct: 231 YLELQRNICQGNLSCWDHHYSDDVFLLIR 259


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 363 SCR--FLGELCHSATSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPSTE 509
           SC+  F  +LCH     E     C+   G+R    E V  +P H G P  E
Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 27/103 (26%), Positives = 43/103 (41%)
 Frame = +1

Query: 124 DVFRSVMGVLKTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFE 303
           DVF  +  VL   +D+NV +       R  E+V++  ++ LI     +   + R    F+
Sbjct: 484 DVFDRIRFVLNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLIT-TKDVAFVTDRVNFEFQ 542

Query: 304 PLPDEPRARENQVDLRLLDGVADFLENFVIQLRLPKGAIESAK 432
              D  R   N++  RL D   D+       LR+     ES K
Sbjct: 543 RYQDTHRQDLNRILNRLTDSHIDWANR---NLRIWNSVQESLK 582


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +3

Query: 543 HCL---CRRQGSYVS*SSALGFRFNTPQETA 626
           HCL     R GS +S +SA  FR+++PQ+++
Sbjct: 63  HCLDIPTVRPGSSMSRTSASSFRYSSPQKSS 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,692
Number of Sequences: 5004
Number of extensions: 53373
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)