Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O18
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 235 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 378
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 602 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 652


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 235 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 378
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 604 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 654


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 311 PTSPEPGRIKWTSDFWTELP 370
           P  PEPG  +W  DF   LP
Sbjct: 82  PGKPEPGHFQWIGDFTYSLP 101


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 457 YRD---LLPRIASQIQWHPSADVAE*QSSPRNRQLRPK 353
           YRD   LLP I+S + W+P++D++   S   N    P+
Sbjct: 283 YRDIICLLPYISSSLTWYPASDLSAFWSLHENHSESPE 320


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +1

Query: 184 CLKEKALRYVENVSNSR----ELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQ 339
           CL +  L YV +  +++     + +    ++I QGSP +++  EP P +P    N+
Sbjct: 96  CLFQACLAYVHSSKSAKMSQPSVIIPQQNAIIPQGSPEASQQREPTPPKPEEPPNE 151


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 459 EEEVEATPAHTGTPSTEDPVSHPRLPR 539
           EEEV  T A T T +TE+P +    P+
Sbjct: 291 EEEVTTTEAPTTTTTTEEPTTEASAPK 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,091
Number of Sequences: 27780
Number of extensions: 317229
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)