Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O15
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0599 - 23550663-23550849,23553236-23553417                       29   3.2  
05_06_0195 + 26291126-26291316,26292432-26292618                       28   5.6  

>01_05_0599 - 23550663-23550849,23553236-23553417
          Length = 122

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 271 WK-RQTVKEATLNV--LVGAEVIFWFYIGECIGKRH-LVGYDV 387
           WK R+ +K   L +  L G E+  WF +GE +G+   + GY V
Sbjct: 80  WKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122


>05_06_0195 + 26291126-26291316,26292432-26292618
          Length = 125

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 274 KRQTVKEATLNVLVGAEVIFWFYIGECIGKRH-LVGYDV 387
           K   V+ A +  L G E+  WF +GE +G+     GY V
Sbjct: 87  KDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,331,452
Number of Sequences: 37544
Number of extensions: 141698
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)