Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O14
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401...    29   2.1  

>07_03_0576 +
           19638725-19638779,19638988-19639144,19639871-19640113,
           19640267-19640801,19640897-19641054,19641194-19641626
          Length = 526

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 226 YENRWSRFRDSDYISTYILIYKNFSFKDN 312
           Y+NRW +  + +Y+    L +KN+   DN
Sbjct: 225 YQNRWFQITEGNYLLEASLKHKNYGVDDN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,246
Number of Sequences: 37544
Number of extensions: 93991
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)