Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O14
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 226 YENRWSRFRDSDYISTYILIYKNF 297
           Y N ++   +++Y + Y  +YKN+
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 226 YENRWSRFRDSDYISTYILIYKNF 297
           Y N ++   +++Y + Y  +YKN+
Sbjct: 97  YNNNYNNNYNNNYNNNYKKLYKNY 120


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 253 DSDYISTYILIYKNF 297
           + DYI  Y+ + KNF
Sbjct: 442 NGDYIRRYLPVLKNF 456


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 177 VARSNYRPRNP 209
           VARSN  PR+P
Sbjct: 906 VARSNVTPRSP 916


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 90  YYYSPIDVGK 119
           +YYSP++ GK
Sbjct: 793 FYYSPVEDGK 802


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,818
Number of Sequences: 438
Number of extensions: 1150
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)