Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O13
         (526 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q124Z0 Cluster: Putative uncharacterized protein precur...    33   5.3  
UniRef50_UPI00006CC0EC Cluster: Leucine Rich Repeat family prote...    32   7.0  
UniRef50_Q6LW64 Cluster: Hypothetical flagellar hook protein Flg...    32   9.3  

>UniRef50_Q124Z0 Cluster: Putative uncharacterized protein
           precursor; n=1; Polaromonas sp. JS666|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 777

 Score = 32.7 bits (71), Expect = 5.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 271 LNMSAELNSYKLQTATRVNMFV---KLNSSANMFTGTSSDTQKNDVMFNP 411
           +++SA+ N Y    A  V+ F+     NS  N F+  ++   KNDV F+P
Sbjct: 457 ISLSAQQNFYAFAGAIGVSFFIHAASFNSYTNSFSQVAAGPYKNDVAFSP 506


>UniRef50_UPI00006CC0EC Cluster: Leucine Rich Repeat family protein;
           n=1; Tetrahymena thermophila SB210|Rep: Leucine Rich
           Repeat family protein - Tetrahymena thermophila SB210
          Length = 1897

 Score = 32.3 bits (70), Expect = 7.0
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +1

Query: 235 VRGTKQLQTATRLNMSAELNSYKLQTATRVNMFVKLNSSANMFTGTSSDTQKNDVMFNPV 414
           + GT  L + +  N++A ++++K     +  M V +N + N     +++  +N++  N +
Sbjct: 234 LNGTTNLNSQSSGNINAIMSNHK-NNQMKNTMMVNMNVNRNYINNANNN--QNNMNSNNI 290

Query: 415 PNMISARLQCSVNAGIS 465
           PN  S +  CS   G S
Sbjct: 291 PNQASNQNYCSNQTGFS 307


>UniRef50_Q6LW64 Cluster: Hypothetical flagellar hook protein FlgE;
           n=1; Photobacterium profundum|Rep: Hypothetical
           flagellar hook protein FlgE - Photobacterium profundum
           (Photobacterium sp. (strain SS9))
          Length = 472

 Score = 31.9 bits (69), Expect = 9.3
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 235 VRGTKQLQTATRLNMSAELNSYKLQTATRVNMFVKLNSSA 354
           V GT Q+QT T  +++ E      +++T+VNM V L++++
Sbjct: 123 VTGTGQIQTGTITDLTVETGDMPARSSTKVNMEVNLDANS 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,083,866
Number of Sequences: 1657284
Number of extensions: 7342113
Number of successful extensions: 13806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13804
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)