Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O13
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    26   4.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.2  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   6.9  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   9.1  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 120 AAYGNYYCNYYFVRFLVLGSLLQLVA*FINVL 25
           A + ++Y   +FV  L LGSL  L A  +NVL
Sbjct: 77  AQFSSFYDKIFFVDMLGLGSLFALAA--VNVL 106


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 LNT*FATLQTATRLNMSAELNSFKQLLDLIC 280
           L+T +A L   TRLN  A + S  Q + LIC
Sbjct: 64  LSTHYAKLSKKTRLNWDAHVVSSVQSIVLIC 94


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 264  SCLKLFSSADMLSLVAVCSVANHVLSY 184
            SC  +FS+A   S V VC   N ++SY
Sbjct: 1265 SCEIIFSNAYERSSVCVCREVNELISY 1291


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 384 SKERCHVQSSSEHD*RTSTM*CQRRDIYRNV 476
           +K++C++  S +      T+ C  RDIY+ +
Sbjct: 394 TKDQCYISKSVDATSHFETLTCDVRDIYKRM 424


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 300 VAV*FRGHIKSSSCLKLFSSADMLS 226
           +++    H   +SCL+ FS+++MLS
Sbjct: 260 LSIDIENHTSVTSCLRSFSASEMLS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,002
Number of Sequences: 5004
Number of extensions: 34668
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)