Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O12
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical ...   126   5e-30
Z81039-4|CAB02776.1|  361|Caenorhabditis elegans Hypothetical pr...    31   0.44 
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AL110490-2|CAB54440.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48B6A.2 protein.
          Length = 91

 Score =  126 bits (305), Expect = 5e-30
 Identities = 52/85 (61%), Positives = 69/85 (81%)
 Frame = +3

Query: 66  KRLELLGKXGTRYGASLRKMVKKXEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 245
           K++ ++GK GTRYGASLRKM KK EV QH++YTCSFCGK+AMKR   GIW+C +C + VA
Sbjct: 6   KKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVA 65

Query: 246 GGAWVFSTTAASSCRSAVRRLREVK 320
           GGA+V+ T  A++ RS +RRLR++K
Sbjct: 66  GGAYVYGTVTAATVRSTIRRLRDLK 90



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 50 MAKRTKKVGITGQ 88
          MAKRTKKVGI G+
Sbjct: 1  MAKRTKKVGIVGK 13


>Z81039-4|CAB02776.1|  361|Caenorhabditis elegans Hypothetical
           protein C25D7.5 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  QNGQTYQKGWNYWANXAHVTVPLYVKWSK 132
           QN Q+Y + WN++   +H    +Y++ SK
Sbjct: 28  QNKQSYPENWNFYPRQSHYDYSVYIRSSK 56


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 147 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 230
           ++ KY C+ C      R   G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254


>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 KRSCVGIWSCKRCKRTVAGGAWVFSTT 272
           K  C+  W+C  C +T+   +W F +T
Sbjct: 333 KEKCILDWTCSTCDKTIE--SWYFRST 357


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 KRSCVGIWSCKRCKRTVAGGAWVFSTT 272
           K  C+  W+C  C +T+   +W F +T
Sbjct: 338 KEKCILDWTCSTCDKTIE--SWYFRST 362


>Z72507-1|CAA96633.2|  172|Caenorhabditis elegans Hypothetical
           protein F17C11.1 protein.
          Length = 172

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 174 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRS 293
           CGK  + R+C  +    +C        W F+TTAA++  S
Sbjct: 69  CGKSPVNRNCTALVPDSKCV-----FKWAFATTAAATACS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,800,629
Number of Sequences: 27780
Number of extensions: 149751
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)