Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O11
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   171   1e-43
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    29   1.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.4  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    27   3.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.5  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   7.3  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   7.3  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   7.3  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   9.7  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  171 bits (415), Expect = 1e-43
 Identities = 89/152 (58%), Positives = 104/152 (68%), Gaps = 3/152 (1%)
 Frame = +2

Query: 86  KAVCVLRG--AVSGTVFFDQQXXKSPV-VVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAG 256
           +AV VLRG   VSG V F+Q    S V V+   V      K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 257 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 436
            HFNPE + HG  ++AVRHVGDLGN+E+ +  G  K +  DS ISL G NSIIGRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121

Query: 437 ADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 532
           A  DDLG G  E S  TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = -3

Query: 562 TYEK*KYLNLSQANDSTSNTATSITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 395
           T++K +  N   + D+ S+  TS + G++ +   +    S  + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550

Query: 394 KRDLRIL 374
           +RDL  L
Sbjct: 551 QRDLLFL 557


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 258  LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKILRSLFM 398
            L++T  +  + +PVLLY +   ++ +  L++ ES  + + KIL +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 244 ATICVVTKFVHMETVFTLSQALDXSRNN-NR*LXXLLIEENSXANST 107
           A +C+  + VH++ V +LS+      NN N+ L  LLI   S   ST
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +1

Query: 496 WW-PYC-----LWSHWLG*DLNTFIFHMLGLVLQ 579
           WW PY      +WS W+  +L T  FHM  + LQ
Sbjct: 413 WWVPYLEYVRFMWSPWIIDNLGTVSFHMYVIYLQ 446


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 573 YQAQHMKNESI*ILAKPMTPQAI 505
           Y     +NES  +LAKPMTP  +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 302 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 385
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 264 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 365
           STLK + +  PV L A+    ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +2

Query: 320 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 499
           D+ NI+  ++  + ++++   Q++    N  + R +    +   L L  H L+   G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485

Query: 500 GRIACGVIGLAKI 538
           G+ AC +  L  I
Sbjct: 486 GQHACAIASLLNI 498


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 243  QPFVLSPNSCTWKPCLPLVKPWTXPETT 160
            +PF L+P + +     P +KPW  P  T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,917
Number of Sequences: 5004
Number of extensions: 60436
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)