Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O11
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 200 1e-51
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 193 1e-49
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 179 2e-45
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 143 2e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 57 1e-08
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.009
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 29 4.4
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 5.8
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 7.7
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 7.7
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 200 bits (487), Expect = 1e-51
Identities = 99/167 (59%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Frame = +2
Query: 35 SSCSPLNLTSSNLTMPAKAVCVLRGA--VSGTVFFDQQXXKSPVVVSGXVQGLTKGKHGF 208
SS SP LTM KAV VL + V GT+ F Q+ P V+G V GL G HGF
Sbjct: 105 SSSSPRGSPEITLTM-VKAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGF 162
Query: 209 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 388
H+H GD TNGC S G H+NP ++HG P RH GDLGN+ A ED GV + + DSQI
Sbjct: 163 HIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQI 221
Query: 389 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 529
L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 222 PLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 193 bits (471), Expect = 1e-49
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Frame = +2
Query: 86 KAVCVLRGA--VSGTVFFDQQXXKSPVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAGA 259
KAV VL + V GT+FF Q+ P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQE-GDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 260 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 439
HFNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 440 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 529
DPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 179 bits (436), Expect = 2e-45
Identities = 88/153 (57%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Frame = +2
Query: 86 KAVCVLRGA--VSGTVFFDQQXXKSPVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAGA 259
KAV VL+G V G V Q + P V+ V GLT G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDD-QGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 260 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 439
HFNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 440 DPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 538
DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 171 LEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 143 bits (346), Expect = 2e-34
Identities = 68/118 (57%), Positives = 78/118 (66%)
Frame = +2
Query: 110 AVSGTVFFDQQXXKSPVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHG 289
AV+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 22 AVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHG 81
Query: 290 GPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 463
PS RHVGDLGNI A +D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 82 APSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 57.2 bits (132), Expect = 1e-08
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = +2
Query: 89 AVCVLRGAVSGTVFFDQQXXKSPVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFN 268
AV +G V V Q +V GL+ GKHG+ ++EFGD T G S G +N
Sbjct: 167 AVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYN 226
Query: 269 PEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA--D 442
P P +GDLG +EA E G + S ++ + +IGR++ ++A D
Sbjct: 227 PSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSIALYATED 276
Query: 443 PDDLGLGGHELSKTTG 490
D G+ ++++ G
Sbjct: 277 RSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +2
Query: 152 SPVVVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAG 256
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 227 HQIRAHGNRVYP*SSPGPLQKQQQVTXXPADRRKQXR*QHHEG 99
H R G+ V+P P P +QQQ+ D +++ +H EG
Sbjct: 120 HLPRGAGHEVWPPHHPPPPPQQQQLQLAQHDAKRKHLAEHDEG 162
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 398 GPNSIIGRTLVVHADPDDLGLGG 466
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 7.7
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +2
Query: 254 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 412
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 413 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 523
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 227 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 406
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,999,997
Number of Sequences: 37544
Number of extensions: 396898
Number of successful extensions: 1028
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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