Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O10
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    30   0.33 
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    28   1.8  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    27   2.3  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   4.1  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   4.1  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.4  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   9.4  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 3    IEHFWRRL*KGLVMLALIVLCFIXVFLYHKPTASWALLSTWAYPTT 140
            ++ FW  +  G     L+ LC I VF Y  P         W + TT
Sbjct: 1046 LKRFWSWITNGFYHSLLLFLCSIAVFYYDGPNKDGLASGHWVWGTT 1091


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -2

Query: 320 NTSRFETSLMSSIPVTTTTLMDPSLKPNRFPYF*DHDCHIKW*HLNFLDSQSTEIKF 150
           N+S F+    S+  +  +T +  S +P R   +  +DC ++W  L  + SQ  E++F
Sbjct: 32  NSSSFDNEAASTT-LGISTAIHASNRPFRQDEYSWNDCWMRWGQLRRVSSQLRELRF 87


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 82  RKTKIKQRTINANITKPFHKRLQK 11
           R   IK  TINANITK  + R +K
Sbjct: 38  RAAAIKDHTINANITKTLNVRNEK 61


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 568 VNILWRLVAGKRYDLXDQRLKKLCNLVMRLFKLXDMSGGILNFLPFLXHFIPR 726
           VN+   LV   R  +     + + NLV++ ++L  + G    FLP L   +P+
Sbjct: 202 VNMYPLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQ 254


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -3

Query: 493 HILRLCKRS*NGSCNRNSLNISARNVWSCATLGHRRKPIPVSFQTISWYRRTHQAF 326
           HI R C+ +   S  R   + S  N ++C + GH+ +   +  +  S  +  H++F
Sbjct: 93  HIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSF 148


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 103 RGLCYPPGPTPLPVVGNLISVLWESRK 183
           R  C   G TPL + G +IS +WE+R+
Sbjct: 197 RFFCGCFGCTPLTLAGGVISDVWETRE 223


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = -2

Query: 470 FMKREL*PKFFKYFSTKRLVLCHVGPSEKTNPSFFPNDLMV*KNPSGLPSNTSRFETSLM 291
           F+++E  P   K F   R      G S   +      ++      S +   T+  ET+  
Sbjct: 59  FLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIPATNSMETNFN 118

Query: 290 SSIPVTTTTLMDPSLKPNRF 231
           +S+P    T   PS  PN F
Sbjct: 119 NSLPAVGKTNTFPSQVPNMF 138


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 127 PTPLPVVGNLISVLWESRKFKCH--HLIWQSWSQKYG 231
           PTPL +V +++ +   +R F C   H + + WS ++G
Sbjct: 398 PTPLYLVSDILQLATHNRSFICSLPHFL-RRWSNEHG 433


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 235 LLGLRLGSINVVVVTGIELIKEVSNREVFEGRPDGFFYTMRSFGKKLGLVFSDGPTW 405
           + G+  G +N  V   +  I  +  R  ++G  + FF    S G  +G  F+D  TW
Sbjct: 186 IAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGYFADQYTW 242


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 341 NPSGLPSNTSRFETSLMSSIPVTTTTL 261
           N S LPS  S   T  +SSIP TT+++
Sbjct: 115 NSSSLPSIPSSSSTPSISSIPHTTSSV 141


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 112 CYPPGPTPLPVVGNLISVLWESRKFKC 192
           C+PP P   P+VGN +  +     + C
Sbjct: 408 CHPPFPWMSPIVGNSMVTVANGHNWMC 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,467,262
Number of Sequences: 5004
Number of extensions: 76570
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)