Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O10
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    28   0.11 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    27   0.27 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
 Frame = +1

Query: 121 PGPTPLPVVGN--LISVLWESRKFKCHHLIWQSWSQKYGNLLGLR-LGSINVVVVTGIEL 291
           PGP  LP+ G   + S +   +  K H   ++  +Q+YG L     L +  ++ V   + 
Sbjct: 54  PGPFSLPIFGTRWIFSCIGYYKLNKIHDA-YKDLNQRYGALCKEEALWNFPMISVFSRQD 112

Query: 292 IKEVSNREV-FEGRP-----DGFFYTMRSFGKKLGLVFSDGPTWHRTR 417
           I+ +  R   +  RP       +  T R     LGLV   G TWH  R
Sbjct: 113 IETIIRRNSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQGQTWHDLR 160


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 38/192 (19%), Positives = 80/192 (41%), Gaps = 2/192 (1%)
 Frame = +1

Query: 88  ISRRHR-GLCYP-PGPTPLPVVGNLISVLWESRKFKCHHLIWQSWSQKYGNLLGLRLGSI 261
           ISRRH   L    PGP  LP++GN +  L+ S       ++ +  ++ + +++ + +G  
Sbjct: 32  ISRRHLLELAEKIPGPPALPLIGNALD-LFGSPDAMFSQVLKK--AENFKDVVKIWVGPK 88

Query: 262 NVVVVTGIELIKEVSNREVFEGRPDGFFYTMRSFGKKLGLVFSDGPTWHRTRRFVLKYLK 441
            V+ +     ++ + +  V+  +   + +     G   GL+ S G  W   R+ +     
Sbjct: 89  LVICLIDPRDVEIILSSNVYIDKSTEYRFFKPWLGD--GLLISTGQKWRNHRKLIAPTF- 145

Query: 442 NFGYNSRFMNVYIGEECEALVQLRFADAGEPILVNQMFHITIVNILWRLVAGKRYDLXDQ 621
           +      F++++       + ++R  +  E    N M  +T V+IL     G      D 
Sbjct: 146 HLNVLKSFIDLFNANARSVVEKMRKENGKEFDCHNYMSELT-VDILLETAMGVSKPTRDH 204

Query: 622 RLKKLCNLVMRL 657
              +    VM++
Sbjct: 205 NAFEYAMAVMKM 216


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 334 DGFFYTMRSFGKKLGLVFSDGPTWHRTRRFVLKYLKNFGY 453
           D +FY   +  + L  + ++ PTW    R VL  L   GY
Sbjct: 28  DYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGY 67


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 338 PSGLPSNTSRFETSLMSSIPVT 273
           P  +  ++S+FE  LM+ +P T
Sbjct: 62  PGHINCDSSKFEEDLMNKLPTT 83


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -1

Query: 564 CNVEHLIDQNRLSSIGKTQLHEGFTFFAYVNVHETGVVT 448
           CN+ H+I  +     GK  ++E   + A+  ++   VV+
Sbjct: 274 CNLGHMISYDDTDGDGKLNVNE--FYMAFSKLYSVSVVS 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,025
Number of Sequences: 438
Number of extensions: 6020
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)