Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O09
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    58   2e-09
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    30   0.43 
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    27   4.0  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.0  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   7.0  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   9.2  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.2  

>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 40/192 (20%), Positives = 83/192 (43%), Gaps = 2/192 (1%)
 Frame = +3

Query: 210 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHVNDEYLLVANS 389
           L   T    VI +    F   V    +D++ V +F+A +    C +C+ +  E+  +ANS
Sbjct: 23  LNSKTDADGVIQITGRLFHRIVNGK-QDFTTVALFSADSSTMNCDVCRLIEPEFKALANS 81

Query: 390 FRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERA-GIH 566
           ++     ++ + F   DF +  ++FQ   + + P    F    KPK    +  + + G+ 
Sbjct: 82  YKLKYGLDSGIRFTYADFGKNKNLFQDFSIESVPNFWIF----KPKSIQAIHVDLSHGVT 137

Query: 567 AEAIAKWIQDRT-DVQIRVFRSPNYSAAVAFSTLFIILAGFLYIRXNNLEFLYNKQLWAV 743
           A  +A  ++  T  +   V++        AF +  I+ A   + R   ++   ++++WA 
Sbjct: 138 ASHLAAIVEKHTGKIADIVYKQDQAKRVGAFLSYIIVGAALFFTRKIIVKIFTSRKVWAA 197

Query: 744 CAVFFCXAMVSG 779
             +     + SG
Sbjct: 198 LTIITVITLSSG 209


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 303 VVMFTAMAPARRCAICQHVNDEYLLVANS-FRFSAAYNNKLFFGIVDFDE 449
           V+ + A A   RC++C  VND Y  ++ S  +  A+ +   F  +  F E
Sbjct: 89  VLRYPAQAMCFRCSLCMTVNDVYFCLSGSQIKTKASTDGSQFISVEHFVE 138


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/75 (18%), Positives = 36/75 (48%)
 Frame = +3

Query: 411 NNKLFFGIVDFDEGSDIFQMLRLNTAPVIMHFPAKGKPKPADTMDFERAGIHAEAIAKWI 590
           +N +  G +D D  SD+     +   P ++ FP    P  ++ + +  A    +++ +++
Sbjct: 71  HNDVLIGKIDADTHSDVADKYHITGFPTLIWFP----PDGSEPVQYSNAR-DVDSLTQFV 125

Query: 591 QDRTDVQIRVFRSPN 635
            ++T ++ R    P+
Sbjct: 126 SEKTGIKKRKIVLPS 140


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 593 LYPLSDGLSMDASSLKV 543
           LYPLSDG ++D S L+V
Sbjct: 315 LYPLSDGETLDTSHLQV 331


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 171 QPRAKGIEEXVQQLTDITAKKSVIPLNINKFKE 269
           Q  +KG++    +LT+ TAK S +P NI    E
Sbjct: 410 QKNSKGLQFTSNELTNPTAKYSQLPNNIANIGE 442


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 210 LTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMA 326
           L    A  S + +N+N F  YVK P   Y  +++   +A
Sbjct: 271 LNSSVAGFSTLAVNVNDFTRYVKHPKTPYVQMLILPLVA 309


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 435 VDFDEGSDIFQMLRLNTAPVIM---HFPAKGKPKPADTMD 545
           VDFD  S I Q LRL  A +++   +F  KG    +  +D
Sbjct: 142 VDFDARSKILQDLRLEYAEILLTKFNFEKKGYQNLSSALD 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,848
Number of Sequences: 5004
Number of extensions: 57207
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)