Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O09
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 4   WQMSISRCSVPPLXNP 51
           WQMS   CS PP   P
Sbjct: 385 WQMSCVACSPPPRQTP 400


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 340 VLSVSMLTMNICWWPTHLDSQL 405
           +LS  ++T  ICW P H+   L
Sbjct: 261 MLSAVVITFFICWAPFHVQRLL 282


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
          protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 90 RXRTRSNAKSEKKWIAQWRDGAP 22
          R   R +A S  +W   WRD  P
Sbjct: 18 RCSVRCSAASGLRWFEIWRDSLP 40


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 471 TFGRYLSLHQNQQYQRIIYYCKQ 403
           TFGR  S H N  Y   I + ++
Sbjct: 594 TFGRLTSKHDNSLYDEYIPFLER 616


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 529  LLTQWTLRELASMLRPSLSGYRTELM 606
            LLT+W+  E  + L  +L G   +L+
Sbjct: 1136 LLTEWSRFEFRAALHEALRGRTAQLI 1161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,987
Number of Sequences: 438
Number of extensions: 3864
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)