Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O08
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    38   0.002
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   4.0  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.3  

>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +1

Query: 196 KRKMSQEKPTFDYHEES--QTEKLARKSKESPFMVIGITGLVAXVGYGAYAYKRRGAMST 369
           K + + E PTF   EES  ++EKL      +PF+ +G    V       Y  +R   +  
Sbjct: 8   KSEENLELPTFPASEESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMA 67

Query: 370 SVFLMQFRVIAQGTVVGALTAGMMY 444
           + F M++RV++QG  + AL   +++
Sbjct: 68  NKF-MRYRVMSQGFTLAALAFSVLF 91


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 241 LHDNRKSVSLVTFFVFIMLNKCVV 170
           LHDN  S  L+ FFV ++   C++
Sbjct: 288 LHDNLNSYFLLKFFVRVLFGVCMI 311


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 199 RKMSQEKPTFDYHEESQTEKLARKSKESPFMVIGITGLVAXVGYGAYAYKRRGAMS 366
           + ++ E   F  HE  Q  +     KE+P  V G+   V  +    + Y  +GA++
Sbjct: 431 KNLNVEGKKFALHERIQALEKQLGEKEAPSQVAGLKQQVEQLKLEPFKYHHQGALA 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,120
Number of Sequences: 5004
Number of extensions: 44118
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)