Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O04
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    72   4e-14
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.9  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   4.5  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   4.5  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   5.9  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   5.9  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   7.8  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 72.1 bits (169), Expect = 4e-14
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = +1

Query: 76  LDEQFKQVADKVRNWKXKPSDDENLALYSLYKQATIGDVNIAQPSGLVE---SAKWKAWN 246
           +   F+Q A  V+  K  P+ DE L LY+L+KQAT+GD N  +P GL++     KW AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNNTEKP-GLLDLKGKFKWNAWE 59

Query: 247 SRKGISQDDAKKQYIENAEKLHSKY 321
             KG S++DA  +YI   ++L +KY
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKY 84


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 329  IYAYLEWSFSAFS-MYCFLASSWEMP 255
            ++ +L W  +  + +YCF  SSW+ P
Sbjct: 4043 LFFFLSWLHATLAEIYCFTCSSWKEP 4068


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 157 YSLYKQATIGDVNIAQPSGLVESAKW 234
           Y L+  + + D+N A+   +VESAKW
Sbjct: 150 YKLF-DSYVYDINTAEQERVVESAKW 174


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 100 ADKVRNWKXKPSDDENLALYSLYK 171
           A+ V NW  + +D ENL++ S ++
Sbjct: 526 AENVNNWMLETNDHENLSMQSHFE 549


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 245 FHAFHLALSTRPLGWAMLTSPMV 177
           FHA  L L +RP G+ +  +P++
Sbjct: 304 FHAVRLTLRSRPAGFGLRCNPIL 326


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 195 HCPAQRSCGERQVEGMEQSQRHLPRRCQE 281
           +CPAQR  G   V G   S+R + +  +E
Sbjct: 486 YCPAQREYGRLNVVGTLMSKRKIMKLVKE 514


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 332 IIYAYLEWSFSAFSMYCFLASSWEMPLRLFHAF 234
           + YAY E S  A+  + F+  S+ +PL L H F
Sbjct: 120 LYYAYGE-SIYAYFHHLFIMDSFMLPLVLHHRF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,532
Number of Sequences: 5004
Number of extensions: 32317
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)