Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O04
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 73 1e-13
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 72 3e-13
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 64 7e-11
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 43 1e-04
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 42 3e-04
05_03_0458 + 14280953-14281866,14281964-14282912 31 0.36
11_06_0715 + 26552962-26553510,26553578-26555746 28 3.3
05_02_0150 - 7111090-7111225,7111251-7111458,7111705-7111774,711... 28 4.4
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 27 5.8
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 27 5.8
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 27 7.7
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 27 7.7
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 7.7
03_01_0463 + 3551764-3551897,3551989-3552046,3552148-3552255,355... 27 7.7
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 72.9 bits (171), Expect = 1e-13
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +1
Query: 70 MSLDEQFKQVADKVRNWKXKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 243
M L E F++ A+KV+ S+++ L LY LYKQAT+GDVN ++P + AKW AW
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60
Query: 244 NSRKGISQDDAKKQYIENAEKLHSKYA 324
+ +G S+++A YI ++L + A
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLQEEAA 87
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 71.7 bits (168), Expect = 3e-13
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +1
Query: 70 MSLDEQFKQVADKVRNWKXKPSDDENLALYSLYKQATIGDVNIAQPSGLV--ESAKWKAW 243
M L E F+Q A+K + S++ L LY LYKQAT+GDVN A+P + AKW AW
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60
Query: 244 NSRKGISQDDAKKQYIENAEKL 309
+ +G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQL 82
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 63.7 bits (148), Expect = 7e-11
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = +1
Query: 70 MSLDEQFKQVADKVRNWKXKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAW 243
M L E+F++ A+K + S+++ L LY LYKQAT+G V +P L + KW AW
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60
Query: 244 NSRKGISQDDAKKQYIENAEKL 309
+ +G S+++A YI ++L
Sbjct: 61 KAVEGKSKEEAMADYITKVKQL 82
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 136 DDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNSRKGISQDDAKKQYIENAEK 306
+D L LY LY+QAT+G N+ +P VE +KW +W+ + +A + +++ E+
Sbjct: 37 NDVALLLYGLYQQATVGPCNVPKPRAWNPVEQSKWTSWHGLGSMPSAEAMRLFVKILEE 95
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 136 DDENLALYSLYKQATIGDVNIAQPSG--LVESAKWKAWNSRKGISQDDAKKQYIENAEKL 309
+ L LY LYK AT G QPS L AKW AW+ + ++A ++YI ++L
Sbjct: 113 EQAQLQLYGLYKIATEGPCTAPQPSALKLKARAKWNAWHKLGAMPTEEAMQKYITVVDEL 172
Query: 310 HSKYA 324
++
Sbjct: 173 FPNWS 177
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 31.5 bits (68), Expect = 0.36
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 38 PTSXISKXNTKCLSTSNSNRSPIRLGTGXPSPVTMRTLRCTP-CTSRLP*VMLTLPSPAV 214
PT S T S+S S+ P+ P P+ TL C+ T P T PS +
Sbjct: 46 PTVPPSLTTTSSPSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSPSASS 105
Query: 215 LWRAPSGRHGTVAKASPKTMPRSNTSKMRRSSTP 316
L P+ R + +K S T ++ T + SS P
Sbjct: 106 LPPVPTPRSASSSKCSAPTSAQTPTRFLSSSSPP 139
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 171 LVQGVQRKVLIVTGLGLP---VPNLIGDLFEL 85
LV G R + ++ +GLP +PN+IGDLF L
Sbjct: 560 LVAGKCRYMSVLELIGLPKDNIPNVIGDLFNL 591
>05_02_0150 -
7111090-7111225,7111251-7111458,7111705-7111774,
7112290-7112367
Length = 163
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 188 MLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRSSTPNTH 325
M+ SP W AP G G +A+ P+ +S NTH
Sbjct: 35 MVINSSPKHTWFAPVGNKGALARIQPQVTELEGKVTSLSTSMENTH 80
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 333 NNLCVFGVELLRIFDVLLLGIVLGDAFATVP-CLPLGALHKTAGLGNVNITYGSLLVQGV 157
NN C F + L++F L L +FA C LG +T L +V G+ L G
Sbjct: 76 NNYCKFDDQRLQLFTSSLYLAALAASFAASRLCTRLGR-RRTMQLASVFFLGGTALCAGA 134
Query: 156 QRKVLIVTG 130
+++ G
Sbjct: 135 ANLAMLIVG 143
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 268 LGRCLCDCSMPSTWRSPQD 212
+ R CDC +W+SPQD
Sbjct: 188 ISRPFCDCMESFSWKSPQD 206
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +1
Query: 97 VADKVRNWKXKP----SDDENLALYSLYKQAT 180
V D++ W P +D+EN + +LYK+AT
Sbjct: 241 VKDRIEEWYRPPWDRTADEENASFNALYKEAT 272
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +2
Query: 197 LPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMRRSSTPNTHKLLLRIK*ISYLNYALS 376
+P PA PSG H + SP P S + KL ++ + + N L+
Sbjct: 5 IPPPAFFQFLPSGAHSSPHHQSPLRSPASERERYLAELLAERQKLAPFMQVLPFCNRLLN 64
Query: 377 HDFL 388
+ L
Sbjct: 65 QEIL 68
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 139 DENLALYSLYKQATIGDVNIAQPSGLVES 225
DE+ AL +L+ A + VNI QPS +VES
Sbjct: 476 DESSALDALHTLADLS-VNILQPSSIVES 503
>03_01_0463 +
3551764-3551897,3551989-3552046,3552148-3552255,
3552664-3552721,3552788-3553014,3553085-3553145,
3553311-3553615
Length = 316
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +1
Query: 79 DEQFKQVADKVRNWKXKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKAWNSRKG 258
DE + A++ + KP+ + +SLY AT ++ +++ KW A
Sbjct: 203 DETWSDCAEQ--GFAVKPTKGSAVLFFSLYPNATFDPGSLHGSCPVIQGEKWSATKWIHV 260
Query: 259 ISQDDAKKQYIENAEKLHS 315
S D+ ++ + E H+
Sbjct: 261 RSYDENGRRSSDKCEDQHA 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,682,306
Number of Sequences: 37544
Number of extensions: 231037
Number of successful extensions: 768
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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