Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O03
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 171 1e-43
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 27 4.0
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 26 6.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.9
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 6.9
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.2
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 9.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.2
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 171 bits (415), Expect = 1e-43
Identities = 89/152 (58%), Positives = 104/152 (68%), Gaps = 3/152 (1%)
Frame = +3
Query: 144 KAVCVLRG--AVSGTVFFDQQXXKSPV-VVSGXVQGLTKGKHGFHVHEFGDNTNGCTSAG 314
+AV VLRG VSG V F+Q S V V+ V K GFH+H+FGDNTNGCTSAG
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 315 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 494
HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121
Query: 495 ADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 590
A DDLG G E S TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 302 ATVCVVTKFVHMETVFALSQALDXSRNN-NR*LXXLLIEENSXANST 165
A +C+ + VH++ V +LS+ NN N+ L LLI S ST
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +3
Query: 378 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 557
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 558 GRIACGV---IGLAKI*IHTF 611
G+ AC + + + KI IH +
Sbjct: 486 GQHACAIASLLNIEKIIIHKY 506
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 45 VRGFSCQTCFLIXNLFSSCSPLNLTSSNLTMPAKAVCVLRGAVSGTVFFDQQXXKS 212
V+ SC+ + + CS LN +S MPA + + G ++ F + KS
Sbjct: 10 VKASSCKHSLSVKQRYFHCSALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKS 65
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 360 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 443
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 322 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 423
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -2
Query: 620 T*EKCMYLNLGQANDSTSNTATSITSGLT*LMATQ----SQVIRVSMDN*SATNDAVRSM 453
T +K N + D+ S+ TS + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 452 KRDL 441
+RDL
Sbjct: 551 QRDL 554
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 301 QPFVLSPNSCTWKPCLPLVKPWTXPETT 218
+PF L+P + + P +KPW P T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 490 TTKVRPMMLLGP*REIWESWIDTLVTP 410
+T + P LL E+WE DT +TP
Sbjct: 78 STLIEPNYLLTAWHELWEELQDTYMTP 104
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 316 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 456
L++T + + +PVLLY + ++ + L++ ES + + KI +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,760
Number of Sequences: 5004
Number of extensions: 60212
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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