Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_O02
(810 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 31 1.4
07_03_1346 + 25927043-25927333,25927867-25927929,25928005-259280... 30 1.9
03_04_0191 - 18293842-18294273 30 2.5
01_06_0922 - 33022709-33023545 30 2.5
04_04_0592 + 26477974-26479311 29 3.3
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 29 3.3
05_01_0192 + 1394342-1396645 29 5.8
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 29 5.8
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 28 7.6
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 28 7.6
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 28 7.6
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065... 28 7.6
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 7.6
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 171 DIERKQEKRKTGLQLQRTHHDGHPQQPRETTHSQRYLRVHHEKFPVLQREQTRLAK 338
DIE +EK + +++R G + +E +R R+H EK +QRE+ L K
Sbjct: 877 DIEAHREKLEDSFKVKRERLKGFNRYVKE--FHKRKERIHREKLDRIQREKINLLK 930
>07_03_1346 +
25927043-25927333,25927867-25927929,25928005-25928093,
25928177-25928237,25928848-25929009,25929099-25929257,
25929351-25929427,25929515-25929654,25929752-25929783,
25929877-25929951,25930268-25930340,25930456-25930544,
25930781-25930933,25931023-25931127
Length = 522
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 503 RDAAVDLLRSLPVVPPMNTSSEDGS 429
RDA L + LP+VPP S EDGS
Sbjct: 89 RDAGCTLWQVLPLVPPGRKSGEDGS 113
>03_04_0191 - 18293842-18294273
Length = 143
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 673 LYRRLHGLAAPTSPPPEPDHLVKH 744
LY LHG+ A +PPP P VKH
Sbjct: 36 LYSPLHGMVAA-APPPPPPQFVKH 58
>01_06_0922 - 33022709-33023545
Length = 278
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 31 ALCRTTMSPPHSFAIRDILPEALSRSPSPSDAELDVTGTETPPPCASTSNENKKNEKPAY 210
A+ R + ++ +R A S SP P + D + +P P A + E ++ PA
Sbjct: 143 AISRRDRAAAAAYGVRSRSARA-SASPPPRREQRDRSVRRSPSPAAKRTPEQRRAASPAP 201
Query: 211 SYNALIMMAIRSSPEK 258
S + +R SP +
Sbjct: 202 SLQRKPPVPVRPSPRR 217
>04_04_0592 + 26477974-26479311
Length = 445
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 106 SPSPSDAELDVTGTETPP--PCASTSNENKKNEKPAYSYN-ALIMMAIRSSPEKR 261
SP P T T TPP P A ++ K N+K + N +L+ + +R +P R
Sbjct: 85 SPPPPTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTR 139
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 52 SPPHSFAIRDILPEALSRSPSPSDAELDVTGTET 153
S H DI P A S SP+P+ A D+T T T
Sbjct: 24 SDHHPHLSIDIPPAAASMSPAPTQAAADITPTPT 57
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 43 TTMSPPHSFAIRDILPEALSRSPS-PSDAELDVTGTETPPPCAST 174
T SPP + P S +P PS +L T TP P AST
Sbjct: 263 TPSSPPPEAPVSSAAPPPASLNPMLPSPPQLPGVSTTTPSPPAST 307
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Frame = +1
Query: 106 SPSPSDAELDVTGTETP--PPCASTSNENKKNEKPAYSYNALIMMAIRSSPEKRLTLNGI 279
SPSP + ++ G + P PP A E + NA+++ + EK L +
Sbjct: 80 SPSPFSPDPELDGGDGPILPPPAQMGAEEGILLREWRRQNAIVLEE-KERKEKELRAQIL 138
Query: 280 YEYIMKNFPYYKENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYW 423
E +Y++ Q + + HN K FV + YW
Sbjct: 139 AEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAEADKQYW 186
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 103 RSPSPSDAELDVTGTETPPPCASTSNENKKNEKPAY 210
R P+ + A T PPPC++ ++++ PA+
Sbjct: 117 RKPAAAAAAATTTSPNNPPPCSTATSDHHHLPPPAF 152
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 138 DVELGVGGRGRTRQGLREDVADREAVR 58
D ELG+GGRG + + L +D E +R
Sbjct: 62 DDELGLGGRGGSHEDLADDCGSDEELR 88
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 28.3 bits (60), Expect = 7.6
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +1
Query: 88 PEALSRSPSPSDAELDVTGTETPPPCASTSNENKKNEKPAYSYNALIMMAIRSSPEKRLT 267
P+A++ S + SD E + P P TS E N++PA + A +A R +++LT
Sbjct: 42 PQAIA-SIASSDGEFS---SPQPGPAMGTSEEASGNKRPAEEHAA---VAQRPHQQRKLT 94
Query: 268 LNG 276
+ G
Sbjct: 95 MGG 97
>03_05_1057 -
30005946-30006088,30006183-30006243,30006493-30006566,
30006939-30007020,30007097-30007355,30007633-30007682,
30008243-30008275
Length = 233
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 19 GASGALCRTTMSPPHSFAIRDILPEALSRSPSPSDAELDVTGTET 153
G+ G+L ++ + S ILP SRS S S A+++ +G ET
Sbjct: 37 GSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFET 81
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 88 PEALSRSPSPSDAELDVTGTETPPPCASTSNENKKNEKP 204
PE + P+D EL +TP P + K+ E P
Sbjct: 285 PETTGKDKKPADPELGQAKEKTPAPQQEEEKKEKEEETP 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,698
Number of Sequences: 37544
Number of extensions: 365962
Number of successful extensions: 1783
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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