Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_O02
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       75   6e-16
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   4.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 75.4 bits (177), Expect = 6e-16
 Identities = 33/78 (42%), Positives = 51/78 (65%)
 Frame = +1

Query: 199 KPAYSYNALIMMAIRSSPEKRLTLNGIYEYIMKNFPYYKENKQGWQNSIRHNLSLNKCFV 378
           +P ++Y +LI  +I  SP+K+LTLN IY +    F Y++ N   W+N++RHNLSL+KCF+
Sbjct: 504 RPPFTYASLIRQSIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFM 563

Query: 379 KVPRHYDDPGKGNYWMLD 432
           +V     +  KG  W +D
Sbjct: 564 RV-----ENVKGAVWTVD 576


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 210 QLQRTHHDGHPQ-QPRETTHSQRYLRVH---HEKFPVLQREQTRLAKFYTSQ 353
           Q+    H  HP  QP++  H  +  + H   HE+  + Q++Q   A    SQ
Sbjct: 167 QMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQ 218


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 330 TLFVLFVIREIFHDVLVDTVESESFLG 250
           T F+L+   +IF       +E E FLG
Sbjct: 384 TYFILYDFNDIFEKDQASFLERERFLG 410


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 330 TLFVLFVIREIFHDVLVDTVESESFLG 250
           T F+L+   +IF       +E E FLG
Sbjct: 384 TYFILYDFNDIFEKDQASFLERERFLG 410


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 252 RETTHSQRYLRVHHEKFPVLQREQTR 329
           RE    +RY ++H+EK  +L+    R
Sbjct: 10  REYRKDRRYEKLHNEKEKLLEERTNR 35


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 252 RETTHSQRYLRVHHEKFPVLQREQTR 329
           RE    +RY ++H+EK  +L+    R
Sbjct: 10  REYRKDRRYEKLHNEKEKLLEERTNR 35


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +1

Query: 112  SPSDAELDVTGTETPPPCASTSNENKKNEKPAYSYNALIMMAIRSSPEKRLTLNG 276
            S +D E+ +       P    S + K ++KP   +N  I         +R+ +NG
Sbjct: 1235 SNADYEVCIGSQIMVSPETLLSYDEKMDQKPKMDFNVDIRYGKNCGKGERIDMNG 1289


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 213 LQRTHHDGHPQQPRETTHSQRYLRVHHEKFPVLQREQTR 329
           LQR HH  +     ++T  Q + R + ++    QR+Q R
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQR 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,065
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)