Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N20
(759 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 32 0.007
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 32 0.007
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 31 0.009
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 28 0.083
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 27 0.19
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 31.9 bits (69), Expect = 0.007
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 359 PGTTIELTCEAAGSPAPSVHW 421
PG + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455
Score = 25.8 bits (54), Expect = 0.44
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 338 LPSYAHTPGTTIELTCEAAGSPAPSVHW 421
+P G T+ L C AG P + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552
Score = 24.2 bits (50), Expect = 1.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 371 IELTCEAAGSPAPSVHWFK 427
+ L C+A G P P++ W K
Sbjct: 727 VALHCQAQGVPTPTIVWKK 745
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 623 ELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLPCRVXGHPKPKIT 757
+ S +L P ++ S+ G V L C G+P P++T
Sbjct: 410 QASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVT 454
Score = 22.6 bits (46), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Frame = +2
Query: 296 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 433
S G H + + +GP S+ P + +E L C A GSP ++ W D
Sbjct: 17 SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68
Score = 21.4 bits (43), Expect = 9.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 362 GTTIELTCEAAGSPAPSVHWFK 427
G T L CE G +V W K
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLK 843
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 31.9 bits (69), Expect = 0.007
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 359 PGTTIELTCEAAGSPAPSVHW 421
PG + L C AAG+P P V W
Sbjct: 435 PGPAVSLKCSAAGNPTPQVTW 455
Score = 25.8 bits (54), Expect = 0.44
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +2
Query: 338 LPSYAHTPGTTIELTCEAAGSPAPSVHW 421
+P G T+ L C AG P + W
Sbjct: 525 IPKVTAVAGETLRLKCPVAGYPIEEIKW 552
Score = 24.2 bits (50), Expect = 1.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 371 IELTCEAAGSPAPSVHWFK 427
+ L C+A G P P++ W K
Sbjct: 723 VALHCQAQGVPTPTIVWKK 741
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 623 ELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLPCRVXGHPKPKIT 757
+ S +L P ++ S+ G V L C G+P P++T
Sbjct: 410 QASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVT 454
Score = 22.6 bits (46), Expect = 4.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Frame = +2
Query: 296 SDGSHKYLSITQGPLPSYAHTPGTTIE--------LTCEAAGSPAPSVHWFKND 433
S G H + + +GP S+ P + +E L C A GSP ++ W D
Sbjct: 17 SAGGHGFDAHLRGP--SFVMEPPSRVEFSNSSGAWLDCTATGSPPLNIDWSTAD 68
Score = 21.4 bits (43), Expect = 9.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 362 GTTIELTCEAAGSPAPSVHWFK 427
G T L CE G +V W K
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLK 839
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 31.5 bits (68), Expect = 0.009
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 377 LTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIAR 502
+ C AG P P V W KND + + +LI + I +
Sbjct: 421 IRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLIGNGTKLIIK 462
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 28.3 bits (60), Expect = 0.083
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 359 PGTTIELTCEAAGSPAPSVHW---FKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTR 529
PG ++ L C A+G+P P + W K S V ++ S ISS T
Sbjct: 407 PGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISS----TH 462
Query: 530 TTSQDVYTCL 559
T +Y C+
Sbjct: 463 TNDGGLYKCI 472
Score = 26.6 bits (56), Expect = 0.25
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 362 GTTIELTCEAAGSPAPSVHWFKND 433
GT + C+A G+P P + W + D
Sbjct: 18 GTGAVVECQARGNPQPDIIWVRAD 41
Score = 26.2 bits (55), Expect = 0.33
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +2
Query: 362 GTTIELTCEAAGSPAPSVHWFKNDSPV 442
G TC G+P +V W K+ P+
Sbjct: 322 GRPATFTCNVRGNPIKTVSWLKDGKPL 348
Score = 25.0 bits (52), Expect = 0.77
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +2
Query: 350 AHTPGTTIELTCEAAGSPAPSVHWFK--NDSP 439
A G+ + C+A G P P V W K D+P
Sbjct: 689 AFAQGSDARVECKADGFPKPQVTWKKAAGDTP 720
Score = 25.0 bits (52), Expect = 0.77
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 371 IELTCEAAGSPAPSVHW 421
++L C A G PAP V W
Sbjct: 1294 VKLPCLAVGVPAPEVTW 1310
Score = 24.6 bits (51), Expect = 1.0
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = +2
Query: 371 IELTCEAAGSPAPSVHWFK-NDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD- 544
+ L C A G P P W+K + V+ NE + ++S TLI+ +D
Sbjct: 230 LPLLCPAQGFPVPVHRWYKFIEGSSRRQPVQLNE-------RVRQVSGTLIIREARVEDS 282
Query: 545 -VYTCL 559
Y C+
Sbjct: 283 GKYLCI 288
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 701 GNRVVLPCRVXGHPKPKIT 757
G+ + C+ G PKP++T
Sbjct: 693 GSDARVECKADGFPKPQVT 711
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 710 VVLPCRVXGHPKPKIT 757
V LPC G P P++T
Sbjct: 1294 VKLPCLAVGVPAPEVT 1309
Score = 21.4 bits (43), Expect = 9.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 659 PRIVVSYSTYVDNIGNRVVLPCRVXGHPKPKIT 757
P+I +++ G + L C G+P P+IT
Sbjct: 394 PQIRQAFAEETLQPGPSMFLKCVASGNPTPEIT 426
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 27.1 bits (57), Expect = 0.19
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 362 GTTIELTCEAAGSPAPSVHWFKNDSPVYEY 451
G I C A G P P + W K+ +Y +
Sbjct: 37 GRKITFFCMATGFPRPEITWLKDGIELYHH 66
Score = 23.0 bits (47), Expect = 3.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +2
Query: 698 IGNRVVLPCRVXGHPKPKIT 757
+G ++ C G P+P+IT
Sbjct: 36 LGRKITFFCMATGFPRPEIT 55
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,343
Number of Sequences: 438
Number of extensions: 3537
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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