Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N13
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...   159   3e-40
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...   155   4e-39
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    28   0.92 
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi...    28   0.92 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    28   0.92 
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   6.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   8.5  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score =  159 bits (385), Expect = 3e-40
 Identities = 73/108 (67%), Positives = 88/108 (81%)
 Frame = +2

Query: 71  APKMVAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRK 250
           AP    +K+  K  ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRK
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRK 67

Query: 251 SEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 394
           SE+EYYA+L++  VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 68  SELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score =  155 bits (376), Expect = 4e-39
 Identities = 71/104 (68%), Positives = 85/104 (81%)
 Frame = +2

Query: 83  VAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIE 262
           V  K+  K  ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRKSE+E
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63

Query: 263 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 394
           YYA+L+K  VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 64  YYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 95  QQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 220
           Q+ K I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC977.14c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 203 KAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACG 337
           ++ +VI++K   P+RK  I+ +  L+  GVH    ++ EL   CG
Sbjct: 87  RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +2

Query: 68  YAPKMVAAKQQXKPIESINSRLALVMKSG---KYCL-GYKQTLKTLRQGKAKLVIIAKNA 235
           Y P ++   +   P + +N ++   +K     K+ L G K+ +K +R+G+  LVI+A + 
Sbjct: 21  YLPALMPIAKPLAP-KKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDI 79

Query: 236 PPL 244
            P+
Sbjct: 80  SPM 82


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 88  CNHFGSVNANESXPRAQMEKK-RLKTHRP 5
           C+H  S+NAN S  RA M +  RL    P
Sbjct: 148 CDHEFSINANVSAARALMNRALRLNQENP 176


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  LAFTLPKWLQQSNXKSPSSQLTPAL 134
           L ++L +WL   N K PS+Q +  L
Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,256
Number of Sequences: 5004
Number of extensions: 30096
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)