Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N13
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 166 1e-41
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 166 1e-41
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 161 2e-40
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 30 0.92
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 2.1
03_05_0830 + 28034179-28035492 29 2.1
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 28 4.9
04_03_0910 + 20751014-20753437 27 6.5
09_04_0339 + 16812809-16812850,16813099-16813527 27 8.6
07_03_1085 - 23851852-23853165 27 8.6
02_05_0358 + 28264928-28266049 27 8.6
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 166 bits (403), Expect = 1e-41
Identities = 80/133 (60%), Positives = 97/133 (72%), Gaps = 5/133 (3%)
Frame = +2
Query: 23 PLLFHL--CSWXGFISIY---APKMVAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLK 187
PLL L C+ F++++ + V A Q K ++IN++L LVMKSGKY LGYK LK
Sbjct: 18 PLLVALSRCASHHFVAMFLLVSDWWVVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLK 77
Query: 188 TLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAI 367
TLR K KL+I+A N PPLRKSEIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I
Sbjct: 78 TLRNSKGKLIILANNCPPLRKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSI 137
Query: 368 TDPGDSDIITTLP 406
DPGDSDII T P
Sbjct: 138 IDPGDSDIINTTP 150
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 166 bits (403), Expect = 1e-41
Identities = 76/107 (71%), Positives = 89/107 (83%)
Frame = +2
Query: 80 MVAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEI 259
MVAAK+ K ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRKSEI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 260 EYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 400
EYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 161 bits (392), Expect = 2e-40
Identities = 76/125 (60%), Positives = 90/125 (72%)
Frame = +2
Query: 38 LCSWXGFISIYAPKMVAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLV 217
+ +W G I PK K E IN++L LVMKSGKY LGYK LKTLR K KLV
Sbjct: 113 ITNWAGLIRKVGPK--------KNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLV 164
Query: 218 IIAKNAPPLRKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIIT 397
I+A N PPLRKSEIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI
Sbjct: 165 IVANNCPPLRKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITK 224
Query: 398 TLPEA 412
LPE+
Sbjct: 225 QLPES 229
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 30.3 bits (65), Expect = 0.92
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +2
Query: 131 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTG--VH 295
L LV ++ + CL G K+ +K++R+G+ L IIA N P+ I + +L + +
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI--DVITHVPILCEEANIPY 90
Query: 296 HYSGNNIELGTA-CGKYYRVCTLAITDPGDSDI 391
Y + +L TA K C L +T P ++
Sbjct: 91 VYVPSKEDLATAGTTKRPTCCVLVLTKPAKGEL 123
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 29.1 bits (62), Expect = 2.1
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Frame = +2
Query: 41 CSWXGFISIYAPKMVAAKQQXKPIESINSRLALVMKS---GKYCLGYKQ------TLKTL 193
C I I A AAKQQ + +ES+ L S K L ++Q T+ T
Sbjct: 347 CGCGSSIPIPAAAAAAAKQQLQQVESLPLSPVLSPLSHLVNKQQLPHEQDRFSGGTISTS 406
Query: 194 RQGKA-KLVIIAKNAPPLRKSEIE 262
A KL + NAPPL +S+IE
Sbjct: 407 NANAAGKLKVADDNAPPLVQSQIE 430
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 149 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 232
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 83 VAAKQQXKPIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 238
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>04_03_0910 + 20751014-20753437
Length = 807
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 62 SIYAPKMVAAKQQXKPIESINSRLALVMKSGKYCLGYKQT 181
S++ P + AA P +SI LV +GK+ LG+ T
Sbjct: 14 SLHLPAISAAADTLSPGQSIAGDDRLVSSNGKFALGFFNT 53
>09_04_0339 + 16812809-16812850,16813099-16813527
Length = 156
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Frame = +2
Query: 107 PIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEY----YAL 274
PI+ + + + L K+ + + L ++ APP +KSEIE+ +
Sbjct: 30 PIDKCLTEASQAINKALEALMDKRLTEASQANNKALDVVVVAAPPAKKSEIEHAMWKQRM 89
Query: 275 LAKTGVHHYSGNNIELGTACGKYYRVCTLAIT 370
A + G+ +L TA Y V +T
Sbjct: 90 FAFAALGMAEGDEKKLATASLAYKNVANAVLT 121
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 149 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 232
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>02_05_0358 + 28264928-28266049
Length = 373
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 42 ALGXDSLAFTLPKWLQQSNXKSPSSQLTPALL 137
A+G D LA T+P L S S L+P+LL
Sbjct: 11 AIGGDPLAATIPPSLPSPAPSSSSLNLSPSLL 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,834
Number of Sequences: 37544
Number of extensions: 205552
Number of successful extensions: 471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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