Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N11
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical pr... 31 0.61
U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical pr... 31 0.61
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 29 3.2
AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical ... 28 5.7
AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81081-1|CAB03090.1| 464|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.9
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 27 9.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.9
>U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical
protein F12D9.1b protein.
Length = 279
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 476 FSLIIVISYIC*SFVLCLVNLLIICSV 556
++L I+YIC S +LC+ L+++C V
Sbjct: 204 YTLFSSITYICGSIILCIAVLMVVCVV 230
>U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical
protein F12D9.1a protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.61
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 476 FSLIIVISYIC*SFVLCLVNLLIICSV 556
++L I+YIC S +LC+ L+++C V
Sbjct: 226 YTLFSSITYICGSIILCIAVLMVVCVV 252
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 108 GQWQTINCHHSSPKTCLY 161
G+WQTI HH P C Y
Sbjct: 123 GKWQTIGKHHELPFVCSY 140
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 108 GQWQTINCHHSSPKTCLY 161
G+WQTI HH P C Y
Sbjct: 123 GKWQTIGKHHELPFVCSY 140
>AF022968-4|AAB69886.2| 458|Caenorhabditis elegans Hypothetical
protein C10F3.4a protein.
Length = 458
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 144 PKTCLYHAX--RWQXXXQTEXQRGERRTSASSTKDEKRPYSHL 266
P C+Y ++ Q +RGE R K+ K P++HL
Sbjct: 93 PLNCMYRCLDGKYDLSMQLNIERGELRRKPMHFKNIKEPFNHL 135
>AF022968-3|AAV28363.1| 482|Caenorhabditis elegans Hypothetical
protein C10F3.4b protein.
Length = 482
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 144 PKTCLYHAX--RWQXXXQTEXQRGERRTSASSTKDEKRPYSHL 266
P C+Y ++ Q +RGE R K+ K P++HL
Sbjct: 117 PLNCMYRCLDGKYDLSMQLNIERGELRRKPMHFKNIKEPFNHL 159
>Z81081-1|CAB03090.1| 464|Caenorhabditis elegans Hypothetical
protein F42D1.2 protein.
Length = 464
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 444 LPAQQPGVTCDNAAARWLLIGARTHHLIL 358
L + P +TCD A RW++ G R LI+
Sbjct: 270 LSPKVPIITCDGIAKRWMVPGWRLGWLII 298
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 279 STVAIGLGGGVLWHHP 326
+TV G GG LWHHP
Sbjct: 3546 TTVESGSGGEELWHHP 3561
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 279 STVAIGLGGGVLWHHP 326
+TV G GG LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 279 STVAIGLGGGVLWHHP 326
+TV G GG LWHHP
Sbjct: 1392 TTVESGSGGEELWHHP 1407
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 279 STVAIGLGGGVLWHHP 326
+TV G GG LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 279 STVAIGLGGGVLWHHP 326
+TV G GG LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,861
Number of Sequences: 27780
Number of extensions: 207196
Number of successful extensions: 588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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