Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N08
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 200 1e-52
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 42 1e-04
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.19
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 28 1.3
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 5.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 26 5.4
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 7.2
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.2
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 26 7.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 7.2
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 9.5
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 9.5
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 200 bits (489), Expect = 1e-52
Identities = 88/150 (58%), Positives = 113/150 (75%)
Frame = +3
Query: 351 IKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDL 530
I+DVW+ NL +E +I ++++Y V+MDTEFPGVVARP+G F+S+ DY YQ LR NVD
Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 81
Query: 531 LRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGI 710
L+IIQ+GL DE G P TWQFNF FNLQ+DMYA +SI+LL SG+ F+KH+E GI
Sbjct: 82 LKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQEVGI 141
Query: 711 XPLEFAELLMSSGLVLIDNIKWLXFHSGYD 800
P +FAELL+ SGLVL + + W+ FHSGYD
Sbjct: 142 EPADFAELLIGSGLVLQEEVTWITFHSGYD 171
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 41.5 bits (93), Expect = 1e-04
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Frame = +3
Query: 357 DVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLR 536
++ N E + + + V H+V++D EF G++ ++T +Y+LLR +
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYT 61
Query: 537 IIQLGLTF--MDENGKT---PPGYTTWQF-NFKFNLQEDMYAQ-DSIDLLQNSGLQFRKH 695
I+Q+G+TF + NGK+ P + +L+ D ++ SI L G F K
Sbjct: 62 ILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQ 121
Query: 696 EEDGIXPLEFAE 731
+G+ L E
Sbjct: 122 LTEGVPYLSRIE 133
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.1 bits (67), Expect = 0.19
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -1
Query: 436 SIATQ*YFWTTCLIIWNSSCKL*FQTSFIPQSLPPGSDMEPKLADGILYRLSVSKREELS 257
S + + + W TCL IW +CKL Q LP + +L++ + R +K E+
Sbjct: 550 STSARRFRWKTCLKIWKEACKLSKTVLDGQQPLPNPQKRQKRLSNQVELRNQWAKFEKEV 609
Query: 256 VFFDAVV 236
F+ V+
Sbjct: 610 EDFEKVL 616
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 28.3 bits (60), Expect = 1.3
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Frame = +3
Query: 216 NTQN-KSKTTASKKTDNSSRLET-DKRYKMPSASFGSISLPGGSDCGIK-DVWNHNLHEE 386
N +N + + T S +TD S+ T + + S + S+ LPG D G+ D +
Sbjct: 303 NVENVRFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMKDVGVPFDDAKGIVKNV 362
Query: 387 FQIIRQVVQKYHWVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMD 566
+R + WV GV+A + + +TAD + + + L+ +LG +
Sbjct: 363 NGFVRPGIYTSGWVKHGPI--GVIATTMMDAFATADTITKDWKSKKEFLKNSKLGWDGLK 420
Query: 567 ENGKTP 584
+N KTP
Sbjct: 421 KNIKTP 426
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 297 SCIVYPFPNEKNYLFFSTPW 238
SC+VY FPN+ + L F W
Sbjct: 58 SCLVYGFPNKVSALKFEWNW 77
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 485 RSKFSNWSCNYSWKFCIHSYPMILLDY 405
+ K S W +W CI SY ++L D+
Sbjct: 535 KEKRSGWYKPDTWHVCITSYQLVLQDH 561
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 800 VISRVEXKPLYVVNEYKT 747
++SR E PLY VN +KT
Sbjct: 230 MVSRKENSPLYTVNRHKT 247
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 555 TFMDENGKTPPGYTT-WQFNFKFNLQEDMYAQDSIDLLQNSGLQFRKHEEDGIXPL 719
T + E+ P Y+ W + L + A +I LLQ +G +F KH+ + L
Sbjct: 336 TLVFESTPAYPDYSRYWSVVERHRLTQWYIAPTAIRLLQRAGNEFVKHDRSSLRVL 391
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 366 NHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 464
+H+L +E +R + ++ + + D +F GVV R
Sbjct: 450 DHSLRDELISLRSLAEQKNTIEFDAKFLGVVER 482
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 294 KMPSASFGSISLPGGSDCGIKDVWN-HNLHEEFQIIR 401
K+P S SI +P G ++WN HN E F R
Sbjct: 68 KIPQKSIFSIVVPEGPQVCDLNIWNFHNPRERFWAAR 104
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 210 VQNTQNKSKTTASKKTDNSSRLETDKRYKMPSA-SFGSISLP 332
++NT N ++T AS+ +N ++ E+D + S+ SLP
Sbjct: 1 MRNTHNPNETEASEDAENDTQSESDLSFDHGSSEKLNRASLP 42
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 49 KSFMSSNXRKKTSHFXMCL 105
K F+SSN R+ +SH+ M L
Sbjct: 1395 KEFLSSNIRRLSSHWIMAL 1413
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2
Query: 255 FFSTPWFSIYFVY 217
FF PW +YF+Y
Sbjct: 59 FFRNPWLDVYFMY 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,338
Number of Sequences: 5004
Number of extensions: 69379
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -