Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N08
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 160 1e-39
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 160 1e-39
Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 30 2.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 30 2.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 30 2.2
AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical ... 30 2.2
U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 28 6.8
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 28 6.8
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 28 6.8
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 160 bits (388), Expect = 1e-39
Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 4/172 (2%)
Frame = +3
Query: 297 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 464
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 465 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 644
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 645 QDSIDLLQNSGLQFRKHEEDGIXPLEFAELLMSSGLVLIDNIKWLXFHSGYD 800
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL F SGYD
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYD 172
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 160 bits (388), Expect = 1e-39
Identities = 76/172 (44%), Positives = 110/172 (63%), Gaps = 4/172 (2%)
Frame = +3
Query: 297 MPSASFGSISLPGGS----DCGIKDVWNHNLHEEFQIIRQVVQKYHWVAMDTEFPGVVAR 464
M S+S G GG+ + I +V+ N+ EEF IR V+ Y +VAMDTEFPGVVA
Sbjct: 1 MASSSSGGAGGAGGASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVAT 60
Query: 465 PIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDENGKTPPGYTTWQFNFKFNLQEDMYA 644
P+G FRS D+ YQ + CNV++L++IQ+G +++ G+ PP WQFNF F+ EDM++
Sbjct: 61 PLGTFRSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDVWQFNFNFSFAEDMFS 120
Query: 645 QDSIDLLQNSGLQFRKHEEDGIXPLEFAELLMSSGLVLIDNIKWLXFHSGYD 800
+S+++L+ +G+ F + +GI F ELL +SGL+ I WL F SGYD
Sbjct: 121 HESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYD 172
>Z74474-1|CAA98954.2| 566|Caenorhabditis elegans Hypothetical
protein K10C8.1 protein.
Length = 566
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 423 WVAMDTEFPGVVARPIGEFRSTADYQYQLLRCNVDLLRIIQLGLTFMDE 569
+VA+D EF G+ I T + +YQ+LR NV R QLGLT +
Sbjct: 25 FVAIDFEFLGLDVSAIS-LHDTVESRYQILRDNVIKYRPCQLGLTLFKQ 72
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 739 IRSSANSNGXIPSSSCFLNCRPEFCNRSIESCAYISSCRLNLKLNCQV 596
+R S N S F C P F CAY SC N ++C V
Sbjct: 946 VRCSENERCTNDGSDWFCECLPGFERIRNGQCAYPGSCNPNDPMSCDV 993
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 739 IRSSANSNGXIPSSSCFLNCRPEFCNRSIESCAYISSCRLNLKLNCQV 596
+R S N S F C P F CAY SC N ++C V
Sbjct: 1530 VRCSENERCTNDGSDWFCECLPGFERIRNGQCAYPGSCNPNDPMSCDV 1577
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 739 IRSSANSNGXIPSSSCFLNCRPEFCNRSIESCAYISSCRLNLKLNCQV 596
+R S N S F C P F CAY SC N ++C V
Sbjct: 946 VRCSENERCTNDGSDWFCECLPGFERIRNGQCAYPGSCNPNDPMSCDV 993
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 739 IRSSANSNGXIPSSSCFLNCRPEFCNRSIESCAYISSCRLNLKLNCQV 596
+R S N S F C P F CAY SC N ++C V
Sbjct: 1530 VRCSENERCTNDGSDWFCECLPGFERIRNGQCAYPGSCNPNDPMSCDV 1577
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 739 IRSSANSNGXIPSSSCFLNCRPEFCNRSIESCAYISSCRLNLKLNCQV 596
+R S N S F C P F CAY SC N ++C V
Sbjct: 1530 VRCSENERCTNDGSDWFCECLPGFERIRNGQCAYPGSCNPNDPMSCDV 1577
>AF047663-6|AAC04447.1| 368|Caenorhabditis elegans Hypothetical
protein W09G12.7 protein.
Length = 368
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 345 CGIKDVWNHNLHEEFQIIRQVVQKYH 422
CG ++ H HEEF +VV KYH
Sbjct: 330 CGAQNEHEHTHHEEFSKTDKVVNKYH 355
>U42439-3|AAA83507.1| 310|Caenorhabditis elegans Hypothetical
protein F19C7.3 protein.
Length = 310
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 342 DCGIKDVWNHNLHEEFQIIRQVVQKYHWV 428
DC + +W H LH Q+I Q + YHW+
Sbjct: 202 DCKVIKLWRHQLHP--QLINQFI--YHWM 226
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VWNHNLHEEFQIIRQVVQKYHWVAMD 437
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VWNHNLHEEFQIIRQVVQKYHWVAMD 437
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 207 FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSASFGSISLPGGSDCG 350
F N QN+S + +NSS + K P S S L G G
Sbjct: 160 FQANLQNRSNRVMQQTPNNSSNHQNHLSLKQPHLSMNSTQLQSGFQTG 207
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 360 VWNHNLHEEFQIIRQVVQKYHWVAMD 437
+W N+HEE +++RQ ++ H + D
Sbjct: 2169 MWQSNVHEELKLLRQDIEARHAMLKD 2194
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 183 KRPSTGA*FVQNTQNKSKTTASKKTDNSSRLETDKRYKMPSAS 311
K P+ + V + KT A KKTD + +ET + K+P +S
Sbjct: 851 KNPTKDSGSVSSASGNGKTVAMKKTDQKT-IETLLKAKIPESS 892
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,594
Number of Sequences: 27780
Number of extensions: 389414
Number of successful extensions: 1054
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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