Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N07
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0635 - 16446805-16447716                                         29   4.6  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    29   4.6  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    29   4.6  

>05_03_0635 - 16446805-16447716
          Length = 303

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 120 RNWTCIGCIQXXSPGNRHCRDEIRGCNLQSPGXPERPPKP 1
           RNWT I   +      + CR  +R CN  SPG   RP  P
Sbjct: 41  RNWTAIS-EEVPGRSGKSCR--LRWCNQLSPGVHRRPFTP 77


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 604 IFDIELICVNIWYHQDFSHKYCQKSV 681
           + D+ + C+N+ Y +D  HK+C  S+
Sbjct: 700 LIDVTVRCLNLLYERDSRHKFCPISL 725


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +3

Query: 114 SFDRYPATNAGNFFGGYGDGYSDNFR 191
           S  R PA   G   GGYG G  DNFR
Sbjct: 533 SAPRAPAYGHGGGRGGYGGGRRDNFR 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,898
Number of Sequences: 37544
Number of extensions: 267753
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)