Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N07
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 29 3.1
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 29 3.1
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 29 3.1
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 28 7.2
Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical p... 28 7.2
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 28 7.2
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 28 7.2
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 28 7.2
Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 395 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 484
L ID Y + Y + W HIFG F + L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 395 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 484
L ID Y + Y + W HIFG F + L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 395 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 484
L ID Y + Y + W HIFG F + L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 PATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVE 230
P GN GG G+G D+F +AR E KK++
Sbjct: 399 PGGPGGNNGGGAGNGGFDDFDDLARRFEELKKIK 432
>Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 PATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVE 230
P GN GG G+G D+F +AR E KK++
Sbjct: 412 PGGPGGNNGGGAGNGGFDDFDDLARRFEELKKIK 445
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 PATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVE 230
P GN GG G+G D+F +AR E KK++
Sbjct: 108 PGGPGGNNGGGAGNGGFDDFDDLARRFEELKKIK 141
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 PATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVE 230
P GN GG G+G D+F +AR E KK++
Sbjct: 399 PGGPGGNNGGGAGNGGFDDFDDLARRFEELKKIK 432
>Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 PATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVE 230
P GN GG G+G D+F +AR E KK++
Sbjct: 412 PGGPGGNNGGGAGNGGFDDFDDLARRFEELKKIK 445
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 111 SSFDRYPATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVETVA*VNRNKIHFLSCRLSPY 290
SS + PA+NA F G + R++ ++ KK++ N+ CR
Sbjct: 537 SSLTQDPASNATGFSGSSPPNSFEETRMMCEDASDGKKIDETRKYRNNRSS--KCRAIII 594
Query: 291 KNTVVC 308
N V C
Sbjct: 595 NNVVFC 600
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 111 SSFDRYPATNAGNFFGGYGDGYSDNFRVVARSTNEKKKVETVA*VNRNKIHFLSCRLSPY 290
SS + PA+NA F G + R++ ++ KK++ N+ CR
Sbjct: 537 SSLTQDPASNATGFSGSSPPNSFEETRMMCEDASDGKKIDETRKYRNNRSS--KCRAIII 594
Query: 291 KNTVVC 308
N V C
Sbjct: 595 NNVVFC 600
>Z48007-1|CAA88052.1| 1140|Caenorhabditis elegans Hypothetical
protein R134.1 protein.
Length = 1140
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 112 PVSTGTPRPTLVISLEXXXXXXXXXLGWS 198
PVSTGT RP L + + +GW+
Sbjct: 25 PVSTGTTRPKLKVGIAAAQKTQSASIGWN 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,723,101
Number of Sequences: 27780
Number of extensions: 272688
Number of successful extensions: 739
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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