Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N05
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 143 IXHFCSVHKGFSXKI*HEN 87
           + H C    GF+ K  HEN
Sbjct: 50  VGHRCQCQPGFTGKYCHEN 68


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 359  IQSLPSFAF*VKSHIGSPDTATCHGD 282
            +Q  P+  F  K H   P+   CH D
Sbjct: 2262 LQVCPNGLFWNKDHCDWPENTECHPD 2287


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 308 GYQCDSSLKKRKRGGT 355
           GY  DS   K+K+G T
Sbjct: 165 GYSADSCDSKKKKGPT 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,175
Number of Sequences: 336
Number of extensions: 1776
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)