Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N04
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 29 0.57
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 3.0
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.0
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 27 3.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 4.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.0
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 5.3
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 25 7.0
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 25 7.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 7.0
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 25 9.3
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 29.1 bits (62), Expect = 0.57
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Frame = +3
Query: 546 VKNEQLKVET---KTEHSESHHAPIV 614
VK+E L+ ET KTEH++S+H P V
Sbjct: 129 VKDEGLRTETIVKKTEHADSNHQPAV 154
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 180 APSIAVAGSQLAQISAAPVGSVVPN 254
APS GS ISAAP+ +++ N
Sbjct: 102 APSTTAMGSSSQNISAAPMANIISN 126
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +3
Query: 507 HHEKSH--PDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
HHE P PP H E + H H P HHE
Sbjct: 200 HHEPGEHMPPPPMHHKPGEHMP-PPPMHHEPGEHMPPPPMHHE 241
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +3
Query: 507 HHEKSH--PDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
HHE P PP H E + H P +HHE
Sbjct: 304 HHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHE 346
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 504 EHHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
+HHE + P H E + + E H P EHH+
Sbjct: 343 KHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHK 384
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 204 SQLAQISA-APVGSVVPNLVAPCGTPCIYPGQSIAPA 311
SQL + S P+ V NL+ PC +P ++ + PA
Sbjct: 662 SQLVEASGNEPLPDFVVNLIQPCLSPALWDSKGNIPA 698
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/78 (25%), Positives = 30/78 (38%)
Frame = +3
Query: 408 ENTGDHKTQHELSDGFNAVVKKFLPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTEH 587
+ G HK H S + +V+ HH H ++K+ LK K H
Sbjct: 16 DEQGSHKNGHSKSHYISKNGSYVETDDVKHTDTHHSSKHE---LKKLKSHFLKDTLK--H 70
Query: 588 SESHHAPIVXEHHETKNE 641
+HHA E HE ++
Sbjct: 71 KRNHHANSNNEKHENSDK 88
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -2
Query: 277 GVPHGATRFGTTDPTGAADIWASCDPATAIDGAPYCKYSTGTTSRPPCTNTLE---NEAP 107
G P T T P+ I P T G Y +TG T T T+ NE
Sbjct: 209 GYPGSVTTTLTGTPSNGTVIDTVEVPTTTNYG--YTTITTGYTGSTTLTTTVPHSGNETG 266
Query: 106 VTTLIAETPXXXXXXXXXXXXFPGDRWKTTDHRPA 2
TT+ ETP +PG T P+
Sbjct: 267 PTTVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPS 301
Score = 25.8 bits (54), Expect = 5.3
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -2
Query: 277 GVPHGATRFGTTDPTGAADIWASCDPATAIDGAPYCKYSTGTTSRPPCTNTLE---NEAP 107
G P T T P+ I P T G Y +TG T T T+ NE
Sbjct: 287 GYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYG--YTTVTTGYTGSTTLTTTVPHSGNETG 344
Query: 106 VTTLIAETPXXXXXXXXXXXXFPGDRWKTTDHRPA 2
TT+ ETP +PG T P+
Sbjct: 345 PTTVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPS 379
Score = 25.8 bits (54), Expect = 5.3
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -2
Query: 277 GVPHGATRFGTTDPTGAADIWASCDPATAIDGAPYCKYSTGTTSRPPCTNTLE---NEAP 107
G P T T P+ I P T G Y +TG T T T+ NE
Sbjct: 365 GYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYG--YTTVTTGYTGSTTLTTTVPHSGNETG 422
Query: 106 VTTLIAETPXXXXXXXXXXXXFPGDRWKTTDHRPA 2
TT+ ETP +PG T P+
Sbjct: 423 PTTVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPS 457
Score = 25.8 bits (54), Expect = 5.3
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -2
Query: 277 GVPHGATRFGTTDPTGAADIWASCDPATAIDGAPYCKYSTGTTSRPPCTNTLE---NEAP 107
G P T T P+ I P T G Y +TG T T T+ NE
Sbjct: 443 GYPGSVTTTLTGAPSNGTVIDTVEIPTTTNYG--YTTITTGYTGSTTLTTTVPHSGNETG 500
Query: 106 VTTLIAETPXXXXXXXXXXXXFPGDRWKTTDHRPA 2
TT+ ETP +PG T P+
Sbjct: 501 PTTVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPS 535
Score = 25.8 bits (54), Expect = 5.3
Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Frame = -2
Query: 277 GVPHGATRFGTTDPTGAADIWASCDPATAIDGAPYCKYSTGTTSRPPCTNTLE---NEAP 107
G P T T P+ I P T G Y +TG T T T+ NE
Sbjct: 521 GYPGSVTTTLTGAPSNGTVIDTVEVPTTTNYG--YTTITTGYTGSTTLTTTVPHSGNETG 578
Query: 106 VTTLIAETPXXXXXXXXXXXXFPGDRWKTTDHRPA 2
TT+ ETP +PG T P+
Sbjct: 579 PTTVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPS 613
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 507 HHEKSHPDPPCHEVKNEQLKVETKTEHSESH 599
HH SH D P + +Q V + +E + H
Sbjct: 307 HHHHSHDDDPSSPAEKKQNHVPSPSEKIQDH 337
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 167 VFNWHYFSSALYEYFRE*STSYNINCGD 84
VFN H++SS + E + + +NI+ D
Sbjct: 198 VFNAHFYSSIMNEVAEKANAGFNISLSD 225
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 474 FLPVNVEKKIEHHEKSHPDPPCHEVKNEQLKVETKTE-HSESH 599
FL + E + HP PP H + +KV K++ H ++H
Sbjct: 73 FLASSCEITVRLSSGGHPSPPVHIYMSALIKVCKKSKPHLQTH 115
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 72 FILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSIAVAGSQLAQISAAPVGSV 245
F + AI+ + ++ +++ GG + P+ + P+ AVA +Q +Q A GS+
Sbjct: 118 FNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVA-AQHSQHFAPWYGSI 174
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 156 PVEYLQYGAPSIAVAGSQ-LAQISAAPVGSVVPNLVAPCGTPCIYPGQSIAPA 311
P + G P + G+ + ++ + V P + P G P +PG PA
Sbjct: 495 PTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPA 547
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 253 FGTTDPTGAADIWAS-CDPATAIDGAP 176
FG TD T A DIW++ C A + G P
Sbjct: 205 FGATDYTHAIDIWSTGCVMAELMLGHP 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,139
Number of Sequences: 5004
Number of extensions: 45482
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -