Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_N04
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0705 - 20846810-20848165 31 1.0
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 29 3.1
07_03_0704 + 20831071-20832381 29 3.1
04_01_0382 - 5076673-5077774,5078122-5078186 29 3.1
09_04_0158 - 15197667-15198548,15201158-15201598 29 4.1
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 29 4.1
05_07_0334 - 29358823-29360247 28 7.2
05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634 28 7.2
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 28 7.2
01_03_0184 + 13560830-13562981,13563604-13564088 27 9.6
>07_03_0705 - 20846810-20848165
Length = 451
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 253 FGTTDPTGAADIWASCDPAT---AIDGAPYCKYSTGTTSRPPCTNTL 122
F TG++ IW C P T A P+ S+ T S+ PC ++L
Sbjct: 103 FSVLADTGSSLIWTQCAPCTECAARPAPPFQPASSSTFSKLPCASSL 149
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 274 VPHGATRFGT-TDPTGAADIWASCDPATAIDGAPYCKYSTGTTS 146
+P G R T P GAA W+ C PA A DG+ ++T S
Sbjct: 1 MPSGGRRLPPWTSPRGAAPRWSPCTPAGA-DGSGRAAHATPPAS 43
>07_03_0704 + 20831071-20832381
Length = 436
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -2
Query: 253 FGTTDPTGAADIWASCDPATAI---DGAPYCKYSTGTTSRPPCTNT 125
F TG+ IW C P T P+ S+ T S+ PCT++
Sbjct: 99 FSVVADTGSDLIWTQCAPCTKCFQQPAPPFQPASSSTFSKLPCTSS 144
>04_01_0382 - 5076673-5077774,5078122-5078186
Length = 388
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 447 DGFNAVVKKFLPVNVEKKIEHHEKSHPDP--PCHEVKNEQLKVETKTEHSE 593
DG N +V+ LP +EKK+ + ++ PD H++ +++ K + HSE
Sbjct: 273 DGRNKLVEYRLPPKIEKKVVNEQRYVPDTRYVLHDI-DQEAKEQALLYHSE 322
>09_04_0158 - 15197667-15198548,15201158-15201598
Length = 440
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 292 PGYIQGVPHG-ATRFGTTDPTGAADIWASCDPATAIDGA 179
P Y+ G+P TR + P ADI A+C P + GA
Sbjct: 220 PSYLNGLPRPFVTRVYSVPPKLLADIKAACAPGVSTYGA 258
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 516 KSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
K HP C +VK ++L++ T+ + + + E HE
Sbjct: 200 KYHPGQSCRKVKRKELRLHTEGDEGKDNAMESTEEGHE 237
>05_07_0334 - 29358823-29360247
Length = 474
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 51 VNIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVEYLQYGAPSI 191
VN F+AV + SA+ TG+ KV G + V V Y +G P +
Sbjct: 122 VNNFLAVLLGNRSAL---TGSGSGKVVASGPNDHVFVYYADHGGPGV 165
>05_04_0387 - 20834510-20834978,20836866-20837329,20837458-20837634
Length = 369
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 180 APSIAVAGSQLAQISAAPVGSVVP-NLVAPCGTP 278
APS A+ +Q A+ AP + P APCGTP
Sbjct: 110 APSSAMPRAQGAEKKKAPSAAAPPPTRTAPCGTP 143
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +3
Query: 489 VEKKIEH-----HEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHETKNE 641
VEK +E+ +++ PD E ++Q +++ TE ES H P+ + E +++
Sbjct: 370 VEKMLENLIPVENKRLEPDDKMKEPVDQQTQLKEPTEGKESSHEPLDEDEFELEDD 425
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 437 VLCFMITCVLIVH*I*IF--VTGSVLFICDNYWNTGLICYYI 318
+L FM+ L V + IF V V ++C N+ LICYYI
Sbjct: 415 ILFFMVLSFLFVI-VLIFDEVWEIVSYMCSNWTKVTLICYYI 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,124
Number of Sequences: 37544
Number of extensions: 301028
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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