Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N04
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AF016417-5|AAB65278.2|  108|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024859-1|ABA00161.2|  443|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical pr...    28   4.9  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical
           protein W06A7.4 protein.
          Length = 257

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +3

Query: 54  NIFVAVFILGVSAINVVTGASFSKVFVQGGREVVPVE-YLQYGAPSIAVAGSQLAQ-ISA 227
           ++ +A+F+L  S+I+ +TG + S+  + G    VP+   L Y    + + GS +   I  
Sbjct: 3   HVGMAMFMLFASSISCLTGWAISRFGLFGVPSAVPMSILLNYNGIILLIVGSSIYPFIKV 62

Query: 228 APVGSVVPNLVAP 266
             VGSV  + V P
Sbjct: 63  NVVGSVASDTVLP 75


>AF016417-5|AAB65278.2|  108|Caenorhabditis elegans Hypothetical
           protein F17A9.1 protein.
          Length = 108

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 363 KEDATGYEYSYLVYDENTGDHKTQHELSDGFNAVVKKFLPVNVEKKIEHH 512
           K+  T YE+ +L Y    G+H   H+ S     ++   +P++V   I  H
Sbjct: 39  KDVMTFYEFDFLFYQFKNGNHDLYHDRSKDPKQLMLSEMPIDVMPDILKH 88


>AC024859-1|ABA00161.2|  443|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.9 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 501 IEHHEKS-HPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
           + HH KS H      EV ++ LKV   TE  E+H  P+V    E
Sbjct: 97  LTHHGKSNHQLYTLTEVYHKALKVHGSTEALEAHRRPLVAMRKE 140


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical protein
            F52H3.7a protein.
          Length = 1245

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 507  HHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHETKNE 641
            H + +HP+    E  +E+     K EHS+   AP   EH+ ++ E
Sbjct: 891  HSDAAHPETATPESGSEE--TFEKVEHSQVQEAPSSEEHNSSEPE 933


>U41992-4|AAL02506.2|  876|Caenorhabditis elegans Hypothetical
           protein F32E10.3 protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 495 KKIEHHEK-SHPDPPCHEVKNEQLKVETKTEHS 590
           KKIE   K +H +P   E KNE+   ETK E S
Sbjct: 614 KKIEKTNKVNHDEPKKEEKKNEEQVKETKLESS 646


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 492 EKKIEHHEKSHPDPPCHEVKNEQL 563
           EK+  + EK + +PP ++ +NEQL
Sbjct: 96  EKRESYQEKDYTNPPVYKAENEQL 119


>Z68131-1|CAA92217.1|  467|Caenorhabditis elegans Hypothetical
           protein B0395.2 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 371 VLFICDNYWNTGLICYYICSGRGY*LPRIYTGRSTWRD*IWY 246
           V F C  ++    + Y+I  G  + + R+ T RS W   +W+
Sbjct: 381 VAFRC--FYPVMFVLYFIFGGTFFAVSRLITNRSAWNTALWF 420


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 492 EKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSE 593
           EK+  + EK +  PP ++ +NEQL  +  T H++
Sbjct: 430 EKRESYQEKYYESPPVYKAENEQL-FDDVTYHND 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,409
Number of Sequences: 27780
Number of extensions: 273732
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)