Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N04
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.4  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 365 FICDNYWNTGLICYYICSGRGY 300
           FIC+N    GL  +Y    RG+
Sbjct: 119 FICENETRQGLTLHYRSKRRGF 140


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 359 CDNYWNT 339
           C+NYWNT
Sbjct: 101 CNNYWNT 107


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 307 GAIDCPGYIQGVPHGATRFGTT 242
           G +D P   Q  P  AT  GTT
Sbjct: 288 GEVDLPPETQPTPPSATLVGTT 309


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 134 YEYFRE*STSYNINCGDA 81
           Y   R+ +TSY + CGD+
Sbjct: 25  YPSIRQGTTSYCLGCGDS 42


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  VSAINVVTGASFSKVFVQGGREVVPV 161
           +SAI V  GA   + F  G R VVP+
Sbjct: 7   ISAICVCVGALTLEEFQIGLRAVVPI 32


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 492 EKKIEHHEKSHPDPPCHEVKNEQLKVETKTEHSESHHAPIVXEHHE 629
           + +I+  EK   DP  H   N+   ++    HS    +  V +H E
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEE 719


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,201
Number of Sequences: 438
Number of extensions: 3394
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)