Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_N02
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA...    35   0.096
AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p pro...    34   0.17 
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    30   2.7  
AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar pr...    29   6.3  
AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-P...    29   6.3  

>AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA
           protein.
          Length = 381

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +3

Query: 612 GPQAHIQLTHDGQYVXDTPEVQHARASHLAQY 707
           G  AH+ LTH G  V DTP+VQ A+A H A +
Sbjct: 173 GQAAHVPLTHGGVPV-DTPDVQAAKAEHYAAH 203



 Score = 34.7 bits (76), Expect = 0.13
 Identities = 21/35 (60%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 612 GPQAHIQ-LTHDGQYVXDTPEVQHARASHLAQYHA 713
           GP  HI  LTH G  V DTPEVQHA+A+H A + A
Sbjct: 118 GP-IHIPVLTHGGVPV-DTPEVQHAKAAHAAAHAA 150



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 624 HIQLTHDGQYVXDTPEVQHARASHLA 701
           H+ + H+G  V DTPEVQHA+A+H A
Sbjct: 252 HVPVIHNGVPV-DTPEVQHAKAAHYA 276



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 612 GPQAHIQLTHDGQYVXDTPEVQHARASHL 698
           GP  HI + H+G  V +  EVQHARA+HL
Sbjct: 319 GP-IHIPVIHNGVPV-EPAEVQHARAAHL 345



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 660 DTPEVQHARASHLAQYHA 713
           +TPEVQHA+A+H A + A
Sbjct: 219 ETPEVQHAKAAHFAAHAA 236


>AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p
           protein.
          Length = 200

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 624 HIQLTHDGQYVXDTPEVQHARASHLA 701
           H+ + H+G  V DTPEVQHA+A+H A
Sbjct: 71  HVPVIHNGVPV-DTPEVQHAKAAHYA 95



 Score = 29.5 bits (63), Expect = 4.8
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 612 GPQAHIQLTHDGQYVXDTPEVQHARASHL 698
           GP  HI + H+G  V +  EVQHARA+HL
Sbjct: 138 GP-IHIPVIHNGVPV-EPAEVQHARAAHL 164



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 660 DTPEVQHARASHLAQYHA 713
           +TPEVQHA+A+H A + A
Sbjct: 38  ETPEVQHAKAAHFAAHAA 55


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +3

Query: 186 AQASYYLGAPAPIQLSPDGKYVLDTPEVXXXXXXXXXXXXXXSTSHGAWSPGYGGYASDA 365
           A  S   GAPAP    P  KY    P+               S+S+GA +P    Y + A
Sbjct: 254 APPSQSYGAPAP----PSSKY--GPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPA 307

Query: 366 ----HYGAPAAGLYKYGPAPLA 419
                YGAPAA    YG AP A
Sbjct: 308 APSSSYGAPAAPSSSYG-APAA 328


>AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar
           protein, putative protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 339 GYGGY-ASDAHYGAPAAGLYKYG 404
           GYGGY  +  +YG  A+G Y YG
Sbjct: 247 GYGGYYGAGGYYGGAASGGYSYG 269


>AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-PA
            protein.
          Length = 3539

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 535  PTHPSRTPQ-LPSPTVPVTLLVTANGLVPR 621
            P  P R  Q LP P VP+ L+  AN L P+
Sbjct: 1512 PVPPPRMQQELPMPLVPLPLVTNANALAPQ 1541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,250,919
Number of Sequences: 53049
Number of extensions: 386798
Number of successful extensions: 1449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)