Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M22
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   226   3e-60
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  226 bits (552), Expect = 3e-60
 Identities = 120/249 (48%), Positives = 154/249 (61%), Gaps = 2/249 (0%)
 Frame = +2

Query: 2   ILLISRRIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXX 181
           +LL+   + E G G G TVYPPLSS  +H G ++DLAI SL L GISS            
Sbjct: 117 MLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMI 176

Query: 182 XXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPI 361
                  S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+
Sbjct: 177 NMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPV 236

Query: 362 LYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*A 541
           LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 +V +
Sbjct: 237 LYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWS 295

Query: 542 HHIFTVGIDIDTRAYFTSA-IIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLF 715
           HH+FTVG+D+DTRAYF++A ++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LF
Sbjct: 296 HHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILF 355

Query: 716 TVGGLTGVI 742
           T+GGLTGVI
Sbjct: 356 TIGGLTGVI 364


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 484 FRNNLCYTSNWVIRIHCLSSSYIHCRYRY*YTSIFYFSYNYC 609
           F + LC+ S + + +H   S Y H  + + + +I  + Y+ C
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLC 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,873
Number of Sequences: 5004
Number of extensions: 39877
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)