Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M21
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   4.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.3  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   9.7  

>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 260 LRVKGPVRMPT 292
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 260 LRVKGPVRMPT 292
           +RVK P+RMPT
Sbjct: 1   MRVKHPLRMPT 11


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -2

Query: 158 PLPGVARWTLPDTTAAAMLL 99
           P+ G+  W +P T+    +L
Sbjct: 434 PIGGMMNWNMPSTSVVGDML 453


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 347 RSLNLHHKEFYGW 309
           + LN+   EF+GW
Sbjct: 202 KELNMIFNEFFGW 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,422
Number of Sequences: 336
Number of extensions: 2067
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)