Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M21
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   178   5e-46
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.63 
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    29   0.63 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   7.7  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.7  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  178 bits (433), Expect = 5e-46
 Identities = 85/115 (73%), Positives = 99/115 (86%)
 Frame = +2

Query: 125 QAKSIEQPQAXVSPXHRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILR 304
           Q    ++ Q   S  HRIR TLTSRNVR+LE VC+DL+N AK ++LRVKGPVR+PTKIL+
Sbjct: 3   QVAKDQKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILK 62

Query: 305 ITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 469
           ITTRKTP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 63  ITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 257 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 409
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   IALSKVXETCGFSGSALXNFCLQSC 77
           I + ++ E CG SGS    FC+Q C
Sbjct: 90  IPVGQLTEICGESGSGKSQFCMQLC 114


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 257 KLRVKGPVRMPTKI---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 427
           K R  G +  P  +   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 428 INIEPGVEVEVTI 466
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 362 MRIHKRVIDLHSPSEIVKQITSINIEPGV 448
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 58  IFACKVVSLGRHSTSNMAAAVVSGKV 135
           + +C V SLG+ S  N+A   +S K+
Sbjct: 140 VLSCSVDSLGKESLINVAKTSMSSKI 165


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 268  KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 384
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,084
Number of Sequences: 5004
Number of extensions: 33243
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)