Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M21
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 165 3e-41
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 164 4e-41
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 164 4e-41
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 52 4e-07
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 3.4
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 28 4.5
02_05_1095 - 34076910-34077431 28 6.0
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 165 bits (400), Expect = 3e-41
Identities = 73/101 (72%), Positives = 90/101 (89%)
Frame = +2
Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
HRIR TL+S++V++LE VC DL+ GAK + L+VKGPVRMPTK+L ITTRK+PCGEG+ TW
Sbjct: 27 HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTW 86
Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 472
DRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 87 DRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 164 bits (399), Expect = 4e-41
Identities = 75/101 (74%), Positives = 90/101 (89%)
Frame = +2
Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
+RIR TL+S+NV++LE VCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TW
Sbjct: 29 NRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTW 88
Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 472
DRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 89 DRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 164 bits (399), Expect = 4e-41
Identities = 75/101 (74%), Positives = 90/101 (89%)
Frame = +2
Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
+RIR TL+S+NV++LE VCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TW
Sbjct: 26 NRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTW 85
Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 472
DRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 86 DRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 158 VSPXHRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 337
++P +IR L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 338 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 466
+ F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 175 HQXHSYFSQCALTRXGLC*PNQWSQETEAACKG--PSPH---ANQDPA 303
H S +CAL R G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 161 RPLPGVARWTLPDTTAAAMLL 99
RP+PG+ R LPD AA+ LL
Sbjct: 29 RPVPGMDRGLLPDAAAASSLL 49
>02_05_1095 - 34076910-34077431
Length = 173
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/86 (26%), Positives = 29/86 (33%)
Frame = +1
Query: 37 SPVQRXTIFACKVVSLGRHSTSNMAAAVVSGKVHRATPGXGLPXSPHQXHSYFSQCALTR 216
SP F C + + S + AAA S +P AL R
Sbjct: 53 SPTNHPGSFRCSLHKEQKRSVHHKAAAAPSSPPSPTSPPASGGAVRLGGARRMGGSALVR 112
Query: 217 XGLC*PNQWSQETEAACKGPSPHANQ 294
G QW++ AA PSP A Q
Sbjct: 113 IGAVESGQWARRALAATIRPSPAAQQ 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,010,294
Number of Sequences: 37544
Number of extensions: 256449
Number of successful extensions: 662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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