Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M21
         (567 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   193   4e-49
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   193   4e-49
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   193   4e-49
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   193   4e-49
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   126   7e-29
AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein.     32   1.6  

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  193 bits (470), Expect = 4e-49
 Identities = 91/102 (89%), Positives = 97/102 (95%)
 Frame = +2

Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
           HRIR TLTSRNV+SLE VCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTW
Sbjct: 18  HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW 77

Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 475
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  193 bits (470), Expect = 4e-49
 Identities = 91/102 (89%), Positives = 97/102 (95%)
 Frame = +2

Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
           HRIR TLTSRNV+SLE VCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTW
Sbjct: 18  HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW 77

Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 475
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  193 bits (470), Expect = 4e-49
 Identities = 91/102 (89%), Positives = 97/102 (95%)
 Frame = +2

Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
           HRIR TLTSRNV+SLE VCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTW
Sbjct: 18  HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW 77

Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 475
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  193 bits (470), Expect = 4e-49
 Identities = 91/102 (89%), Positives = 97/102 (95%)
 Frame = +2

Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
           HRIR TLTSRNV+SLE VCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTW
Sbjct: 18  HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTW 77

Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 475
           DRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 78  DRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  126 bits (303), Expect = 7e-29
 Identities = 57/60 (95%), Positives = 59/60 (98%)
 Frame = +2

Query: 269 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 448
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


>AB002337-1|BAA20797.2| 1709|Homo sapiens KIAA0339 protein protein.
          Length = 1709

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = +1

Query: 88  RHSTSNMAAAVVSGKVHRATPGXGLPXSPHQXHSYFSQCALTRXGLC*PNQWSQETEAAC 267
           R  +S+  AA  +G     TPG G P S     S   Q   +  G   P Q SQ T    
Sbjct: 219 RRRSSSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSRQDTPSSFGQFTP-QSSQGTPYTS 277

Query: 268 KGPSPHANQDPAY 306
           +G +P+ +QD AY
Sbjct: 278 RGSTPY-SQDSAY 289


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,020,465
Number of Sequences: 237096
Number of extensions: 1457394
Number of successful extensions: 2856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2851
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)