Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M21
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   173   1e-43
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  173 bits (420), Expect = 1e-43
 Identities = 77/101 (76%), Positives = 93/101 (92%)
 Frame = +2

Query: 170 HRIRXTLTSRNVRSLEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 349
           HRIR TLTS+NV+ LE VCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 350 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 472
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 212 LEXVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 334
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 149  QAXVSPXHRIRXTLTSRNVRSLEXVCADLINGAKK 253
            +A  SP HRI   +TS+N       C+ L+  A++
Sbjct: 945  RAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,618,501
Number of Sequences: 27780
Number of extensions: 201579
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)