Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M20
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   175   4e-45
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    29   0.76 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   5.3  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.3  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   7.0  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.0  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.3  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  175 bits (427), Expect = 4e-45
 Identities = 95/212 (44%), Positives = 123/212 (58%), Gaps = 1/212 (0%)
 Frame = +1

Query: 97  LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTW 273
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A     
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66

Query: 274 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 453
              T P                     +DLFGS                 + Y  KK+ K
Sbjct: 67  ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122

Query: 454 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 633
           P  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVV 182

Query: 634 EDDKVSVDLLTEKIQEFEXFVQSVDIAAFNKI 729
           EDDKVS++ L E+++ FE +VQS DIAA +K+
Sbjct: 183 EDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 753 NITCYGCLDFVKCSNVNRLYKXFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 598
           NITC   LD +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 82  NITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 285 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 175
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 97   LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 255
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 582 FGGSPEKAFHFNSAYLVFHFLHIGFIIP-WLDIKENR 475
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
 Frame = -1

Query: 777 LIEKVAXINITCYGCLDFVKCSN-VNRLYKX-FKF----------LNFFCQQINRNFVVL 634
           +I+ ++ +   C+   + +KCSN VN  Y   F F          LN+  Q+I  N ++L
Sbjct: 104 IIDAISLLVARCFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLIL 163

Query: 633 DDTHNL 616
            ++HN+
Sbjct: 164 GNSHNV 169


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 604 INKLQIMCVIEDDKVSVDLLTEKIQEFEXFVQSVDIAAFNK 726
           INK Q+M   E ++ ++DLL++   EF   + + D+    K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 235 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*XPWAVLTSPT 68
           +Y +VV G G  P  C +   L  QLE     E +    F + ++      P A L S  
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367

Query: 67  AIVSFS 50
            I SFS
Sbjct: 368 RIKSFS 373


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 693 CTIC*HCCI*QNLNSHNM*YL*XQLFQ 773
           C++C  C   QNLNSH+   L  +LFQ
Sbjct: 466 CSLCYLCLYAQNLNSHSSQSL-FELFQ 491


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 296 PPVLNPRLPPQQRKTTMTT 352
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,178
Number of Sequences: 5004
Number of extensions: 57280
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)