Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M20
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 155 5e-38
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 150 1e-36
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 143 1e-34
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.028
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 28 9.7
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 155 bits (375), Expect = 5e-38
Identities = 96/219 (43%), Positives = 118/219 (53%), Gaps = 8/219 (3%)
Frame = +1
Query: 97 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAE 261
L L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+ S AE
Sbjct: 33 LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAE 92
Query: 262 RKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADK 441
+ ++ VDLFG +A A K
Sbjct: 93 GEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVK 146
Query: 442 KSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQI 621
S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI KLQI
Sbjct: 147 ASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQI 206
Query: 622 MCVIEDDKVSVDLLTEK---IQEFEXFVQSVDIAAFNKI 729
M I DD VSVD L E + F+QS DI AFNKI
Sbjct: 207 MMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 150 bits (363), Expect = 1e-36
Identities = 93/218 (42%), Positives = 116/218 (53%), Gaps = 7/218 (3%)
Frame = +1
Query: 97 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWS 276
L L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ + +
Sbjct: 14 LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKA 73
Query: 277 QGTS----PLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKK 444
G + +DLFG + A K
Sbjct: 74 VGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKA 126
Query: 445 SKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIM 624
S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYGI KLQIM
Sbjct: 127 SSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIM 186
Query: 625 CVIEDDKVSVD-LLTEKIQE--FEXFVQSVDIAAFNKI 729
I DD VSVD L+ E + E FVQS DI AFNKI
Sbjct: 187 LTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 143 bits (347), Expect = 1e-34
Identities = 92/222 (41%), Positives = 113/222 (50%), Gaps = 11/222 (4%)
Frame = +1
Query: 97 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAE 261
L L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I S A+
Sbjct: 14 LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTAD 73
Query: 262 R---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAY 432
K S VDLFG +A
Sbjct: 74 GQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAA 127
Query: 433 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 612
A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI K
Sbjct: 128 AVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKK 187
Query: 613 LQIMCVIEDDKVSVDLLTEK---IQEFEXFVQSVDIAAFNKI 729
LQIM I DD VSVD L E + ++QS DI AFNKI
Sbjct: 188 LQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +1
Query: 97 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 240
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +1
Query: 97 LNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIASYTP 255
L+ + +LA Y++G S AD + K P A L PHV W++ I+S P
Sbjct: 148 LDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS-RP 206
Query: 256 AERKT 270
A +KT
Sbjct: 207 AWKKT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,376,117
Number of Sequences: 37544
Number of extensions: 387483
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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