Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M17
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959...    29   1.8  
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166...    29   1.8  
02_01_0717 + 5351504-5351602,5353401-5353499,5353574-5353675,535...    28   3.2  
03_03_0043 + 14016958-14017106,14017198-14017291,14018488-140185...    27   5.6  

>11_03_0071 -
           9589669-9590079,9592113-9592334,9592455-9592608,
           9592981-9593212,9593303-9593558,9593850-9593870
          Length = 431

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +3

Query: 27  RLHKRYDAMRVPLILLFFIYAV---LNICNGLETYEVCYMKIDPGKKTEKNKSEYVTKYA 197
           ++ K++D   + +I++  I  +      C+   T E          K  +  S Y ++ A
Sbjct: 182 KITKKFDVFSLGVIIIQIIAGIDGYRQCCDMSSTQEFVDYVYAKWNKRVQGISRYASREA 241

Query: 198 YDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKLSLEN-YYKAARSVLKQRKYE 368
             L  R+CI+        N ++  ++N+ +   +     +EN + +  +S+L Q+  E
Sbjct: 242 DMLAVRQCIELSLRCVEANRDKRPAINDIIHQLNELDAEIENMFMRQPKSLLGQKSSE 299


>01_06_1691 -
           39215192-39215283,39215341-39215413,39215874-39216615,
           39216730-39217985,39218080-39218187,39218289-39218474,
           39218625-39218675
          Length = 835

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 141 IDPGKKTEKNKSEYVTKYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKLSLE 320
           I+  +  E  + EYV  Y Y+L  RK  KF  S  G      D+ ++    C P  L +E
Sbjct: 205 IEKARSDEDKRKEYVVSYLYNL-MRKYSKFFRSEAGD-----DTDSQGSSPCSPTILGME 258

Query: 321 NYY 329
           + Y
Sbjct: 259 DMY 261


>02_01_0717 +
           5351504-5351602,5353401-5353499,5353574-5353675,
           5353756-5353815,5353900-5354006,5354114-5354196,
           5354372-5354462,5354561-5354768
          Length = 282

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 153 KKTEKNKSEYVTKYAYDLNKRKCIKFPYSGYGGNVNRFDSLNECVKACDPAKLSLENY 326
           K TE +  E+  KY    +++K +K  Y+ + GN+NR      C   C   KL    +
Sbjct: 120 KVTEADIEEFEAKYRGSDSEKKDLKDLYTKFKGNMNRL----FCSMICSDPKLDSHRF 173


>03_03_0043 +
           14016958-14017106,14017198-14017291,14018488-14018582,
           14018658-14018825,14019091-14019163,14019236-14019288,
           14019720-14019811,14020141-14020193,14020272-14020397,
           14020710-14020955
          Length = 382

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 144 DPGKKTEKNKSEYVTKYAYD 203
           DPG  T +N S+Y++ Y YD
Sbjct: 134 DPGTVTAENVSQYLSAYPYD 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,816,997
Number of Sequences: 37544
Number of extensions: 162410
Number of successful extensions: 325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)