Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M16
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 49 5e-07
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 37 0.002
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 27 2.5
SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa... 26 3.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 4.4
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 5.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 7.6
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 25 7.6
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 48.8 bits (111), Expect = 5e-07
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +2
Query: 17 FCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVHNK 196
+C G+S+GM++F+ L +K++ V ++ R+ + P+I Y G +
Sbjct: 30 YCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKM 89
Query: 197 THEEIVKWVELFRTQQGNNWNSRLRKYQY-TNHPSVQGPWTPFA 325
+ I + L R G RL KY + +PSV+G W+PF+
Sbjct: 90 SASSIFQKAILCRDSDG--LKPRLIKYPVESTNPSVRGIWSPFS 131
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 372 NLTSGSSAVFNSGSLNANGVQGPWTEGWFVYWYLRSLEFQLLPC*VR 232
++T S + A G+ PWT+ W W+L SL++ C ++
Sbjct: 425 SITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSSLQYYAYECVIK 471
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 244 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQIFSDYD 140
+L ++ + YD+ GFV P+ P ++F D D
Sbjct: 55 VLDDDRANASYDISSGFVHIKFPKETPGEVFPDLD 89
>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
Psf2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 226 IVPNSTRQQLELETPQVPVHEPP 294
IVP+ T QL L + +P+ +PP
Sbjct: 27 IVPSETMDQLPLVSATIPIMKPP 49
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 156 YSPTMTGPRCLRGFKYTTTPGLSFEKSTKSCSMKSLIPRLAPLDLQNF 13
Y+ T+T F T T +F S S S+IP AP + +F
Sbjct: 427 YTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTSAPSSVSSF 474
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 221 VELFRTQQGNNWNSRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELPD--VRFGSNN 385
V+LF+ + LRKY N +V T +AF D L LPD V+ SN+
Sbjct: 232 VDLFQNSHFESLLVMLRKYDSPNKNAVLILPTLYAFIDKVLEVEYLPDQKVQLRSNS 288
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 260 SRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELP 361
SRL+K ++ N P+ +G +T + + + E P
Sbjct: 744 SRLKKEKHKNRPASKGTYTTYTSSEERQRSTEDP 777
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 187 PQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVRVQGPRIEH 348
PQQ+P+ R M + N QQL L P PL + + Q + +H
Sbjct: 130 PQQHPQLQRMMPILSSNQPIQQLPLPNQASPYIPVPLQQQQQSQPQQQPQQQQH 183
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 295 GVVRVLVLAESRVPVVALLSSEQFDP 218
GV ++ L S+VP+ ++SS+ DP
Sbjct: 37 GVTLLIFLVMSQVPLYGIVSSDSSDP 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,674
Number of Sequences: 5004
Number of extensions: 48143
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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