Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M16
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 56 2e-08
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 32 0.27
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 31 0.83
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 30 1.5
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 2.5
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35... 29 3.4
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 29 3.4
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 28 4.4
04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149 28 4.4
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 28 4.4
12_02_0288 + 16856922-16858046 28 5.9
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 7.7
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 27 7.7
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/102 (33%), Positives = 49/102 (48%)
Frame = +2
Query: 11 MKFCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLKPRRHRGPVIVGEYLNGDRLWMSVH 190
+ +C G+SRG+R F+E L F + NP + V + R + P + G Y N + + V
Sbjct: 14 VNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKGIYKNHNERVVCVR 73
Query: 191 NKTHEEIVKWVELFRTQQGNNWNSRLRKYQYTNHPSVQGPWT 316
N E+I+ R G +LR T PSVQG WT
Sbjct: 74 NLAPEDILLQATRLRNSLGRK-VVKLRTRHVTKRPSVQGTWT 114
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 32.3 bits (70), Expect = 0.27
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Frame = +1
Query: 166 GQIVDERPQQNPRGDRKMG--RIVPN-STRQQLELETPQVPVHEPPLGPRTLDSVRVQ-- 330
G I+ PQQ P+G R R PN Q++ L P +P PP GP L +Q
Sbjct: 476 GSIISPTPQQGPKGSRPSRGLRGRPNVRDPQRMGLPVPLMP--PPPFGPLGLPPGPMQPI 533
Query: 331 GPRIEH 348
GP + H
Sbjct: 534 GPNMSH 539
>05_07_0364 - 29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 30.7 bits (66), Expect = 0.83
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -2
Query: 213 TISSWVLLWTLIHNLSPFKYSPTMTGPRCLRGFKYTTTPGLSFEKSTKSCSMKSLIPRLA 34
T +SW +LWTL +YS RC G Y P + F+ S K ++SL
Sbjct: 853 TAASWAMLWTL-------RYSTFRRNNRCFVG--YVVDPQI-FDISPKQPLLRSLC--CG 900
Query: 33 PLDLQNF 13
PLD++ F
Sbjct: 901 PLDIRRF 907
>06_03_0968 - 26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +1
Query: 103 GGVFKAT*TSWASHSRRIFERGQIVDERPQQNPRGDR--KMGRIVPNSTRQQLELETPQV 276
G V++ TS + S R E G ++ + G+ G + NS+ Q + + +
Sbjct: 966 GTVYQQRATSVDNVSSRHDENGHVILGANNSSYGGENGSNNGILDMNSSSSQRDAASSTM 1025
Query: 277 PVHEPPLGPRTLDSVRVQGPRIEHGRATRR 366
E +GP+T D V +EH RR
Sbjct: 1026 MASEKGIGPKTADQVNYISDALEHDGLRRR 1055
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 248 NNWNSRLRKYQYTNHPSVQGPWTPFAFKDPELNTAELPD 364
N WN+R ++ Q T P + F D E+ E PD
Sbjct: 211 NFWNTRCKRIQRTGEPLYPKEFNHFKLTDLEVMNCESPD 249
>08_01_0051 -
355392-355450,355507-355634,356271-356425,356883-357012,
357600-357739,358384-358552,360286-360557
Length = 350
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 202 RGDRKMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVRVQGPRIEHGR----ATRRE 369
R D + R PN+TR + + Q PP GP T +V G + + R AT ++
Sbjct: 25 RHDIRTARPTPNATRSRRDQGNAQPYPPPPPRGPGTTWVPQVSGTKYQAARGVEEATAKQ 84
Query: 370 IR 375
+R
Sbjct: 85 LR 86
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 214 KMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVR 324
++ +++P STR++L V V E P GPR S R
Sbjct: 691 RVAKLLPRSTRERLRKLVESVFVGEGPTGPRMKGSWR 727
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 166 GQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLG 300
G IV ER NP G ++ G V +S+ QQ+ P+ PLG
Sbjct: 171 GVIVGERRCSNPSGKKQQGGRVRSSSAQQM------APIRPKPLG 209
>04_03_0304 - 14119371-14119390,14119868-14119974,14120064-14120149
Length = 70
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 17 FCKSNGASRGMRDFIEQDLVDFSKDNPGVVVYLK 118
FC+S+ AS R+F++++ D NP + V ++
Sbjct: 18 FCQSSPASAPAREFVKKNYGDIKARNPSLPVLIR 51
>04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +1
Query: 103 GGVFKAT*TSWASHSRRIFERGQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQV-- 276
GG F + W + S ++ E QIV R +N RK + + +Q+ +LE Q
Sbjct: 967 GGTFSSRHNQWRAGSAQVQEALQIVKCRANKNVTPVRKKEKQKMSDQQQEEDLEEKQKMG 1026
Query: 277 -PVHEPPLGPRTLDSVRVQGPRIEHGRATRREIR**QSTTRN 399
E PR + + + P +E+R + T RN
Sbjct: 1027 DQQQEEDQNPREAEMIE-EAPVQLFSITQNQEMRDVEDTNRN 1067
>12_02_0288 + 16856922-16858046
Length = 374
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 170 RLWMSVHNKTHEEIVKWVELFRT-QQGNNWNSRLRKYQ-YTNHPSVQGPWTPFAFKDP 337
R +M V +K H ++V+ L QQG ++ R+ + YT+H + WT +K P
Sbjct: 57 RNYMLVFHKRHRQLVQDSYLPEILQQGRALTAKNRQRRLYTHHENHMSTWTHVPWKHP 114
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 190 QQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPP 294
Q+ GD+ + R + + Q EL PQ P PP
Sbjct: 3304 QRGTNGDKPIARFLHDQGAQSPELTHPQQPPESPP 3338
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 160 ERGQIVDERPQQNPRGDRKMGRIVPNSTRQQLELETPQVPVHEPPLGPRTLDSVRVQGP 336
+ ++ + Q+ P GD+ + PN + E +T P + +G T +VQGP
Sbjct: 251 QSAEVETDAHQERPIGDQP--GVEPNKDIPETERQTSSPPFNNTNVGSETSTFDKVQGP 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,507
Number of Sequences: 37544
Number of extensions: 317609
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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