Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_M16
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   4.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 173 ICPRSNILRL*LAHDVYVALNTPPHQGCLLRNQ 75
           +C   N +   L+  +++++  PPH    L+NQ
Sbjct: 754 LCEAVNGIGAGLSAVIFISVQAPPHFEIKLKNQ 786


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 144 MTGPRCLRGFKYTTTPGLS 88
           +T P  + G KY  TP LS
Sbjct: 254 LTLPGAMEGLKYYVTPNLS 272


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 144 MTGPRCLRGFKYTTTPGLS 88
           +T P  + G KY  TP LS
Sbjct: 307 LTLPGAMEGLKYYVTPNLS 325


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 464 TPPFLIHPTFVSRTSVSTVQLPLRVVDCYYRISRRVARPC 345
           T PFL  P      S S  +L L +++ +   S  +  PC
Sbjct: 17  TSPFLGGPQLTDVCSASNGELFLALLNFFVATSPVIGEPC 56


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 244 LLSSEQFDPFYDLLVGFVVDAHPQSVPVQ 158
           +LSSE ++P  D +  + ++     +PV+
Sbjct: 115 ILSSESYNPQVDFVADYKIEGKVLLLPVR 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,321
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)