Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M15
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 106 4e-24
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 57 3e-09
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 57 3e-09
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 2.4
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.1
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 27 3.1
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 5.4
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 26 7.2
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 9.5
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 106 bits (254), Expect = 4e-24
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +3
Query: 342 KKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSYIPGIGHNLQ 521
K K L G+PF +GV + KPKKPNSA RK VRLS G+ + +YIPGIGHN Q
Sbjct: 37 KTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRSVTAYIPGIGHNAQ 96
Query: 522 EHNVVLVRVGRLKDCPGVKLKCVRGKHDLSHV 617
EH VVL+R GR +DCPGV+ VRG +D++ V
Sbjct: 97 EHAVVLLRGGRAQDCPGVQYHVVRGVYDIAGV 128
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 57.2 bits (132), Expect = 3e-09
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
Frame = +3
Query: 360 NPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIP--GIGHNLQEHN 530
+P G+ AKG+V++ + + K+PNSA RKCV V+L NGK++ +++P G + + E++
Sbjct: 39 SPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDEND 98
Query: 531 VVLV----RVGRLK-DCPGVKLKCVR----GKHDLSHVIKQK 629
VL+ R G+ K D PGV+ K V+ G L H K+K
Sbjct: 99 EVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 57.2 bits (132), Expect = 3e-09
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 12/102 (11%)
Frame = +3
Query: 360 NPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIP--GIGHNLQEHN 530
+P G+ AKG+V++ + + K+PNSA RKCV V+L NGK++ +++P G + + E++
Sbjct: 39 SPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDEND 98
Query: 531 VVLV----RVGRLK-DCPGVKLKCVR----GKHDLSHVIKQK 629
VL+ R G+ K D PGV+ K V+ G L H K+K
Sbjct: 99 EVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEK 140
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 577 FTPGQSFNLPTLTRTTLCSCKLCPMPG 497
F PG F L T T L LC PG
Sbjct: 405 FRPGSDFTLATTNDTALLEATLCLSPG 431
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 327 TGPHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRK 449
T P R S P+ P++ L V KKP KP+ +K
Sbjct: 128 TDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPSKPRKK 168
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 459 VRLSNGKEMVSYIPGIGHNLQEHNVVL 539
+ LS+GKE+V Y+ +GH + V +
Sbjct: 432 ISLSHGKEIVRYLRSLGHEKEGQGVFM 458
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 120 NIKHNNQVKMNLIRRGMSLL 179
NI+ NN +K+N IRR SLL
Sbjct: 11 NIQSNNVLKINKIRRAPSLL 30
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 571 PGQSFNLPTLTRTTLCSCKLCPMPGIYD 488
P S LPT+ TT C +L M I+D
Sbjct: 50 PDASAKLPTVIPTTRCRLRLLKMQRIHD 77
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 137 SSKDESYKKRNVAPISRLQDTV--HNSQSNSTGGFNKTNRAIVQFSNSPN 280
SS +KK + +S+ + + HNS+ S+G F T+ + SNSP+
Sbjct: 27 SSFSSFFKKSSQTYLSKRSEKLNEHNSKLKSSGSF--TSNSQTDLSNSPS 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,247
Number of Sequences: 5004
Number of extensions: 63512
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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