Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_M15
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 56 4e-08
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 56 4e-08
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 45 6e-05
05_01_0534 - 4601844-4602297,4602689-4602847,4602947-4603514,460... 36 0.049
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 30 2.5
06_02_0248 + 13468100-13468336,13468426-13468569,13469044-134698... 29 3.2
12_01_0232 - 1746434-1746516,1747170-1747264,1747331-1747434,174... 29 4.3
11_01_0235 - 1807448-1807709,1807818-1807921,1809133-1809228,180... 29 4.3
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 28 9.9
02_05_0240 - 27110752-27111180 28 9.9
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 357 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG--HNLQEH 527
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ +++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 528 NVVLVR-VGR----LKDCPGVKLKCVR 593
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 357 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG--HNLQEH 527
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ +++P G + ++E+
Sbjct: 37 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 528 NVVLVR-VGR----LKDCPGVKLKCVR 593
+ VL+ GR + D PGV+ K V+
Sbjct: 97 DEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Frame = +3
Query: 357 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG--HNLQEH 527
+ P G+ AKG+VL+ + + K+PNSA RKC V+L NGK++ +++P G + ++E+
Sbjct: 207 KKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEEN 266
Query: 528 NVVLVR-VGR----LKDCPGVKLKCVR 593
+ VL+ GR + D PGV+ K V+
Sbjct: 267 DEVLIAGFGRKGHAVGDIPGVRFKVVK 293
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +3
Query: 357 RNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKEMVSYIPGIG--HNLQEH 527
+ P G+ AKG+VL+ + + K+PNSA KC V+L NGK++ +++P G + ++E+
Sbjct: 108 KKPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKEN 167
Query: 528 NVVLV 542
V V
Sbjct: 168 EVAYV 172
>05_01_0534 -
4601844-4602297,4602689-4602847,4602947-4603514,
4604853-4605246
Length = 524
Score = 35.5 bits (78), Expect = 0.049
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = -1
Query: 524 FLQVMPDAGYIRHHFLAIRQSYQNTFTVRGVRLLRFFYYGL*NDTLSEGIPVKRIPRFPL 345
F +V PDAG H F + + Y ++ G RLL F+ L P R +
Sbjct: 306 FRRVWPDAGDDYHRFCSAMEEYDSSMRALGERLLAMFFKAL--GLAGNDAPGGETER-KI 362
Query: 344 LNVRSSSVHLGQRRHCPRDETSLG 273
+S++HL CP + +G
Sbjct: 363 RETLTSTIHLNMFPRCPDPDRVVG 386
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 483 MVSYIPGIGHNLQEHNV-VLVRVGRLKDCPGVKLKCVR 593
+VS++PG H L E + L+++G KD P KL+ V+
Sbjct: 1475 LVSFVPGTNHQLSEACIGALIKLG--KDRPNCKLEMVK 1510
>06_02_0248 +
13468100-13468336,13468426-13468569,13469044-13469808,
13470272-13470564,13470642-13470833,13471151-13471229,
13471339-13471431,13471519-13471704
Length = 662
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +3
Query: 333 PHIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRLSNGKEMVSY----IP 500
P KRK++ A VV T + KPKK K +L++ + E + +P
Sbjct: 83 PRRSKRKAQAATEPEAEATAVVRTTALSKPKKRRGERGKNMLLKEAKQDEEMEKAGKPVP 142
Query: 501 GIGHNLQEHNVVLVR 545
HN Q N V R
Sbjct: 143 MKNHNPQSRNWVRAR 157
>12_01_0232 -
1746434-1746516,1747170-1747264,1747331-1747434,
1748677-1748772,1748860-1748919
Length = 145
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 GQSGKVKRLSRRETKVCARQARLVARHQTEGVG*EG 646
G+SG +KR+ R + +V LV +H +G G G
Sbjct: 30 GESGLIKRVIRSQNRVIVEGKNLVKKHIKQGEGHTG 65
>11_01_0235 -
1807448-1807709,1807818-1807921,1809133-1809228,
1809323-1809382
Length = 173
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 539 GQSGKVKRLSRRETKVCARQARLVARHQTEGVG*EG 646
G+SG +KR+ R + +V LV +H +G G G
Sbjct: 30 GESGLIKRVIRSQNRVIVEGKNLVKKHIKQGEGHTG 65
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 66 MEFALKNHNIWLHSNY*YNIKHNNQVKMNLIRRGMSLLSL 185
MEF +H + LHSN +KH ++ ++++ S SL
Sbjct: 776 MEFTANSHLLVLHSNKNDLMKHPSKTNFGMVQKSFSGASL 815
>02_05_0240 - 27110752-27111180
Length = 142
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 500 RHRA*LAGTQRGPGQSGKVKRLSRRETKVCARQAR 604
RHR AG GPG +++ L RR + A AR
Sbjct: 88 RHRQRAAGGAGGPGAEQRLQSLRRRSMRRAAEAAR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,427,501
Number of Sequences: 37544
Number of extensions: 429200
Number of successful extensions: 1107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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